| Title: “Differential Expression Identification” |
| Purpose: “ASPIS omics Steatosis case study” |
| Input.data: “NormData_TG_Gates_Rat_invitro_ENS.txt” |
| Author: “Marcha Verheijen (ONTOX)” |
| Date: ‘2024-01-11’ |
Applied tools:
The R-ODAF pipeline (Omics Data Analysis Framework for Regulatory Application)
for Microarray technology was used. (Publication: “R-ODAF: Omics data analysis framework for regulatory application”, 2022, Regulatory Toxicology and Pharmacology.) This pipeline can be found at https://github.com/R-ODAF/Main and was based on:
ArrayAnalysis - affyAnalysisStat
a tool for statistical analysis of Affymetrix expression data. Copyright 2010-2014 BiGCaT Bioinformatics
Overview of samples and groups
| Array | Name | CompoundClass | Group | Group_Dose | SteatosisPotential | Group_Time | Dose | TimeDose | TimeDose_low | TimeDose_middle | TimeDose_high | TimeDose2 | TimeDose_middlehigh | Source.Name | Characteristics.organism. | Characteristics.individual. | Characteristics.strain. | Characteristics.age. | Unit.time.unit. | Characteristics.developmental.stage. | Characteristics.sex. | Characteristics.organism.part. | Characteristics.cell.type. | Characteristics.genotype. | Characteristics.cohort. | Description | Material.Type | Protocol.REF | Protocol.REF.1 | Protocol.REF.2 | Protocol.REF.3 | Extract.Name | Labeled.Extract.Name | Label | Protocol.REF.4 | Assay.Name | Technology.Type | Array.Design.REF | Term.Source.REF | Protocol.REF.5 | Comment..ArrayExpress.FTP.file. | Factor.Value.cohort. | Term.Source.REF.1 | Term.Accession.Number | Factor.Value.compound. | Factor.Value.dose. | Unit.dose.unit. | Dose.1 | Factor.Value.time. | Unit.time.unit..1 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 003017362007.CEL | TG_rat_vit_Ami_ctl_2h_1 | Steatotic | Non_steatotic | Non_steatotic_none | none | Non_steatotic_2h | Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | 3017077026 | Rattus norvegicus | 5039011LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | amiodarone | Control _ amiodarone | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5193041LRA | 5193041LRA:biotin | biotin | P_MTAB_23069 | 3017362007 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip | amiodarone | ChEMBL | CHEMBL633 | amiodarone | NA | none | 2 | hour | |
| 003017362008.CEL | TG_rat_vit_Ami_ctl_2h_2 | Steatotic | Non_steatotic | Non_steatotic_none | none | Non_steatotic_2h | Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | 3017077027 | Rattus norvegicus | 5039012LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | amiodarone | Control _ amiodarone | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5193042LRA | 5193042LRA:biotin | biotin | P_MTAB_23069 | 3017362008 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip | amiodarone | ChEMBL | CHEMBL633 | amiodarone | NA | none | 2 | hour | |
| 003017362015.CEL | TG_rat_vit_Ami_ctl_8h_1 | Steatotic | Non_steatotic | Non_steatotic_none | none | Non_steatotic_8h | Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | 3017078004 | Rattus norvegicus | 5039021LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | amiodarone | Control _ amiodarone | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5193051LRA | 5193051LRA:biotin | biotin | P_MTAB_23069 | 3017362015 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip | amiodarone | ChEMBL | CHEMBL633 | amiodarone | NA | none | 8 | hour | |
| 003017362016.CEL | TG_rat_vit_Ami_ctl_8h_2 | Steatotic | Non_steatotic | Non_steatotic_none | none | Non_steatotic_8h | Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | 3017078005 | Rattus norvegicus | 5039022LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | amiodarone | Control _ amiodarone | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5193052LRA | 5193052LRA:biotin | biotin | P_MTAB_23069 | 3017362016 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip | amiodarone | ChEMBL | CHEMBL633 | amiodarone | NA | none | 8 | hour | |
| 003017362023.CEL | TG_rat_vit_Ami_ctl_24h_1 | Steatotic | Non_steatotic | Non_steatotic_none | none | Non_steatotic_24h | Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | 3017078012 | Rattus norvegicus | 5039031LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | amiodarone | Control _ amiodarone | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5193061LRA | 5193061LRA:biotin | biotin | P_MTAB_23069 | 3017362023 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip | amiodarone | ChEMBL | CHEMBL633 | amiodarone | NA | none | 24 | hour | |
| 003017362024.CEL | TG_rat_vit_Ami_ctl_24h_2 | Steatotic | Non_steatotic | Non_steatotic_none | none | Non_steatotic_24h | Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | 3017078013 | Rattus norvegicus | 5039032LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | amiodarone | Control _ amiodarone | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5193062LRA | 5193062LRA:biotin | biotin | P_MTAB_23069 | 3017362024 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip | amiodarone | ChEMBL | CHEMBL633 | amiodarone | NA | none | 24 | hour | |
| 003017594025.CEL | TG_rat_vit_Ami_280nm_2h_1 | Steatotic | Steatotic | Steatotic_low | low | Steatotic_2h | Low | Steatotic_2h_Low | Steatotic_2h_Low | Steatotic_2h_Low | 3017077028 | Rattus norvegicus | 5039041LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | amiodarone | Low _ amiodarone | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5200121LRA | 5200121LRA:biotin | biotin | P_MTAB_23069 | 3017594025 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip | amiodarone | ChEMBL | CHEMBL633 | amiodarone | 2.8e-01 | micromolar | low | 2 | hour | |||
| 003017594026.CEL | TG_rat_vit_Ami_280nm_2h_2 | Steatotic | Steatotic | Steatotic_low | low | Steatotic_2h | Low | Steatotic_2h_Low | Steatotic_2h_Low | Steatotic_2h_Low | 3017077029 | Rattus norvegicus | 5039042LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | amiodarone | Low _ amiodarone | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5200122LRA | 5200122LRA:biotin | biotin | P_MTAB_23069 | 3017594026 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip | amiodarone | ChEMBL | CHEMBL633 | amiodarone | 2.8e-01 | micromolar | low | 2 | hour | |||
| 003017007014.CEL | TG_rat_vit_Ami_280nm_8h_1 | Steatotic | Steatotic | Steatotic_low | low | Steatotic_8h | Low | Steatotic_8h_Low | Steatotic_8h_Low | Steatotic_8h_Low | 3017078006 | Rattus norvegicus | 5039051LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | amiodarone | Low _ amiodarone | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5009011LRA | 5009011LRA:biotin | biotin | P_MTAB_23069 | 3017007014 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip | amiodarone | ChEMBL | CHEMBL633 | amiodarone | 2.8e-01 | micromolar | low | 8 | hour | |||
| 003017007015.CEL | TG_rat_vit_Ami_280nm_8h_2 | Steatotic | Steatotic | Steatotic_low | low | Steatotic_8h | Low | Steatotic_8h_Low | Steatotic_8h_Low | Steatotic_8h_Low | 3017078007 | Rattus norvegicus | 5039052LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | amiodarone | Low _ amiodarone | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5009012LRA | 5009012LRA:biotin | biotin | P_MTAB_23069 | 3017007015 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip | amiodarone | ChEMBL | CHEMBL633 | amiodarone | 2.8e-01 | micromolar | low | 8 | hour | |||
| 003017007022.CEL | TG_rat_vit_Ami_280nm_24h_1 | Steatotic | Steatotic | Steatotic_low | low | Steatotic_24h | Low | Steatotic_24h_Low | Steatotic_24h_Low | Steatotic_24h_Low | 3017078014 | Rattus norvegicus | 5039061LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | amiodarone | Low _ amiodarone | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5009021LRA | 5009021LRA:biotin | biotin | P_MTAB_23069 | 3017007022 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip | amiodarone | ChEMBL | CHEMBL633 | amiodarone | 2.8e-01 | micromolar | low | 24 | hour | |||
| 003017007023.CEL | TG_rat_vit_Ami_280nm_24h_2 | Steatotic | Steatotic | Steatotic_low | low | Steatotic_24h | Low | Steatotic_24h_Low | Steatotic_24h_Low | Steatotic_24h_Low | 3017078015 | Rattus norvegicus | 5039062LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | amiodarone | Low _ amiodarone | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5009022LRA | 5009022LRA:biotin | biotin | P_MTAB_23069 | 3017007023 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip | amiodarone | ChEMBL | CHEMBL633 | amiodarone | 2.8e-01 | micromolar | low | 24 | hour | |||
| 003017346023.CEL | TG_rat_vit_Ami_1400nm_2h_1 | Steatotic | Steatotic | Steatotic_middle | middle | Steatotic_2h | Middle | Steatotic_2h_Middle | Steatotic_2h_Middle | Steatotic_2h_MiddleHigh | Steatotic_2h_MiddleHigh | 3017077030 | Rattus norvegicus | 5039071LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | amiodarone | Middle _ amiodarone | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5174061LRA | 5174061LRA:biotin | biotin | P_MTAB_23069 | 3017346023 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip | amiodarone | ChEMBL | CHEMBL633 | amiodarone | 1.4e+00 | micromolar | middle | 2 | hour | ||
| 003017346024.CEL | TG_rat_vit_Ami_1400nm_2h_2 | Steatotic | Steatotic | Steatotic_middle | middle | Steatotic_2h | Middle | Steatotic_2h_Middle | Steatotic_2h_Middle | Steatotic_2h_MiddleHigh | Steatotic_2h_MiddleHigh | 3017078001 | Rattus norvegicus | 5039072LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | amiodarone | Middle _ amiodarone | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5174062LRA | 5174062LRA:biotin | biotin | P_MTAB_23069 | 3017346024 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip | amiodarone | ChEMBL | CHEMBL633 | amiodarone | 1.4e+00 | micromolar | middle | 2 | hour | ||
| 003017346009.CEL | TG_rat_vit_Ami_1400nm_8h_1 | Steatotic | Steatotic | Steatotic_middle | middle | Steatotic_8h | Middle | Steatotic_8h_Middle | Steatotic_8h_Middle | Steatotic_8h_MiddleHigh | Steatotic_8h_MiddleHigh | 3017078008 | Rattus norvegicus | 5039081LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | amiodarone | Middle _ amiodarone | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5174071LRA | 5174071LRA:biotin | biotin | P_MTAB_23069 | 3017346009 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip | amiodarone | ChEMBL | CHEMBL633 | amiodarone | 1.4e+00 | micromolar | middle | 8 | hour | ||
| 003017346010.CEL | TG_rat_vit_Ami_1400nm_8h_2 | Steatotic | Steatotic | Steatotic_middle | middle | Steatotic_8h | Middle | Steatotic_8h_Middle | Steatotic_8h_Middle | Steatotic_8h_MiddleHigh | Steatotic_8h_MiddleHigh | 3017078009 | Rattus norvegicus | 5039082LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | amiodarone | Middle _ amiodarone | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5174072LRA | 5174072LRA:biotin | biotin | P_MTAB_23069 | 3017346010 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip | amiodarone | ChEMBL | CHEMBL633 | amiodarone | 1.4e+00 | micromolar | middle | 8 | hour | ||
| 003017346017.CEL | TG_rat_vit_Ami_1400nm_24h_1 | Steatotic | Steatotic | Steatotic_middle | middle | Steatotic_24h | Middle | Steatotic_24h_Middle | Steatotic_24h_Middle | Steatotic_24h_MiddleHigh | Steatotic_24h_MiddleHigh | 3017078016 | Rattus norvegicus | 5039091LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | amiodarone | Middle _ amiodarone | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5174081LRA | 5174081LRA:biotin | biotin | P_MTAB_23069 | 3017346017 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip | amiodarone | ChEMBL | CHEMBL633 | amiodarone | 1.4e+00 | micromolar | middle | 24 | hour | ||
| 003017346018.CEL | TG_rat_vit_Ami_1400nm_24h_2 | Steatotic | Steatotic | Steatotic_middle | middle | Steatotic_24h | Middle | Steatotic_24h_Middle | Steatotic_24h_Middle | Steatotic_24h_MiddleHigh | Steatotic_24h_MiddleHigh | 3017078017 | Rattus norvegicus | 5039092LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | amiodarone | Middle _ amiodarone | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5174082LRA | 5174082LRA:biotin | biotin | P_MTAB_23069 | 3017346018 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip | amiodarone | ChEMBL | CHEMBL633 | amiodarone | 1.4e+00 | micromolar | middle | 24 | hour | ||
| 003017251002.CEL | TG_rat_vit_Ami_7um_2h_1 | Steatotic | Steatotic | Steatotic_high | high | Steatotic_2h | High | Steatotic_2h_High | Steatotic_2h_High | Steatotic_2h_MiddleHigh | Steatotic_2h_MiddleHigh | 3017078002 | Rattus norvegicus | 5039101LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | amiodarone | High _ amiodarone | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5127061LRA | 5127061LRA:biotin | biotin | P_MTAB_23069 | 3017251002 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip | amiodarone | ChEMBL | CHEMBL633 | amiodarone | 7.0e+00 | micromolar | high | 2 | hour | ||
| 003017251003.CEL | TG_rat_vit_Ami_7um_2h_2 | Steatotic | Steatotic | Steatotic_high | high | Steatotic_2h | High | Steatotic_2h_High | Steatotic_2h_High | Steatotic_2h_MiddleHigh | Steatotic_2h_MiddleHigh | 3017078003 | Rattus norvegicus | 5039102LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | amiodarone | High _ amiodarone | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5127062LRA | 5127062LRA:biotin | biotin | P_MTAB_23069 | 3017251003 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip | amiodarone | ChEMBL | CHEMBL633 | amiodarone | 7.0e+00 | micromolar | high | 2 | hour | ||
| 003017250018.CEL | TG_rat_vit_Ami_7um_8h_1 | Steatotic | Steatotic | Steatotic_high | high | Steatotic_8h | High | Steatotic_8h_High | Steatotic_8h_High | Steatotic_8h_MiddleHigh | Steatotic_8h_MiddleHigh | 3017078010 | Rattus norvegicus | 5039111LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | amiodarone | High _ amiodarone | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5127071LRA | 5127071LRA:biotin | biotin | P_MTAB_23069 | 3017250018 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip | amiodarone | ChEMBL | CHEMBL633 | amiodarone | 7.0e+00 | micromolar | high | 8 | hour | ||
| 003017250019.CEL | TG_rat_vit_Ami_7um_8h_2 | Steatotic | Steatotic | Steatotic_high | high | Steatotic_8h | High | Steatotic_8h_High | Steatotic_8h_High | Steatotic_8h_MiddleHigh | Steatotic_8h_MiddleHigh | 3017078011 | Rattus norvegicus | 5039112LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | amiodarone | High _ amiodarone | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5127072LRA | 5127072LRA:biotin | biotin | P_MTAB_23069 | 3017250019 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip | amiodarone | ChEMBL | CHEMBL633 | amiodarone | 7.0e+00 | micromolar | high | 8 | hour | ||
| 003017250026.CEL | TG_rat_vit_Ami_7um_24h_1 | Steatotic | Steatotic | Steatotic_high | high | Steatotic_24h | High | Steatotic_24h_High | Steatotic_24h_High | Steatotic_24h_MiddleHigh | Steatotic_24h_MiddleHigh | 3017078018 | Rattus norvegicus | 5039121LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | amiodarone | High _ amiodarone | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5127081LRA | 5127081LRA:biotin | biotin | P_MTAB_23069 | 3017250026 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip | amiodarone | ChEMBL | CHEMBL633 | amiodarone | 7.0e+00 | micromolar | high | 24 | hour | ||
| 003017250027.CEL | TG_rat_vit_Ami_7um_24h_2 | Steatotic | Steatotic | Steatotic_high | high | Steatotic_24h | High | Steatotic_24h_High | Steatotic_24h_High | Steatotic_24h_MiddleHigh | Steatotic_24h_MiddleHigh | 3017078019 | Rattus norvegicus | 5039122LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | amiodarone | High _ amiodarone | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5127082LRA | 5127082LRA:biotin | biotin | P_MTAB_23069 | 3017250027 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip | amiodarone | ChEMBL | CHEMBL633 | amiodarone | 7.0e+00 | micromolar | high | 24 | hour | ||
| 003017115005.CEL | TG_rat_vit_Ctc_ctl_2h_1 | Steatotic | Non_steatotic | Non_steatotic_none | none | Non_steatotic_2h | Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | 3017722023 | Rattus norvegicus | 5005011LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | carbon tetrachloride | Control _ carbon tetrachloride | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5045071LRA | 5045071LRA:biotin | biotin | P_MTAB_23069 | 3017115005 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.7.zip | carbon tetrachloride | ChEMBL | CHEMBL44814 | carbon tetrachloride | NA | none | 2 | hour | |
| 003017115006.CEL | TG_rat_vit_Ctc_ctl_2h_2 | Steatotic | Non_steatotic | Non_steatotic_none | none | Non_steatotic_2h | Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | 3017722024 | Rattus norvegicus | 5005012LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | carbon tetrachloride | Control _ carbon tetrachloride | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5045072LRA | 5045072LRA:biotin | biotin | P_MTAB_23069 | 3017115006 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.7.zip | carbon tetrachloride | ChEMBL | CHEMBL44814 | carbon tetrachloride | NA | none | 2 | hour | |
| 003017115013.CEL | TG_rat_vit_Ctc_ctl_8h_1 | Steatotic | Non_steatotic | Non_steatotic_none | none | Non_steatotic_8h | Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | 3017722029 | Rattus norvegicus | 5005031LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | carbon tetrachloride | Control _ carbon tetrachloride | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5045081LRA | 5045081LRA:biotin | biotin | P_MTAB_23069 | 3017115013 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.7.zip | carbon tetrachloride | ChEMBL | CHEMBL44814 | carbon tetrachloride | NA | none | 8 | hour | |
| 003017115014.CEL | TG_rat_vit_Ctc_ctl_8h_2 | Steatotic | Non_steatotic | Non_steatotic_none | none | Non_steatotic_8h | Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | 3017722030 | Rattus norvegicus | 5005032LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | carbon tetrachloride | Control _ carbon tetrachloride | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5045082LRA | 5045082LRA:biotin | biotin | P_MTAB_23069 | 3017115014 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.7.zip | carbon tetrachloride | ChEMBL | CHEMBL44814 | carbon tetrachloride | NA | none | 8 | hour | |
| 003017115021.CEL | TG_rat_vit_Ctc_ctl_24h_1 | Steatotic | Non_steatotic | Non_steatotic_none | none | Non_steatotic_24h | Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | 3017723007 | Rattus norvegicus | 5005041LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | carbon tetrachloride | Control _ carbon tetrachloride | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5045091LRA | 5045091LRA:biotin | biotin | P_MTAB_23069 | 3017115021 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.7.zip | carbon tetrachloride | ChEMBL | CHEMBL44814 | carbon tetrachloride | NA | none | 24 | hour | |
| 003017115022.CEL | TG_rat_vit_Ctc_ctl_24h_2 | Steatotic | Non_steatotic | Non_steatotic_none | none | Non_steatotic_24h | Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | 3017723008 | Rattus norvegicus | 5005042LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | carbon tetrachloride | Control _ carbon tetrachloride | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5045092LRA | 5045092LRA:biotin | biotin | P_MTAB_23069 | 3017115022 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.7.zip | carbon tetrachloride | ChEMBL | CHEMBL44814 | carbon tetrachloride | NA | none | 24 | hour | |
| 003017289026.CEL | TG_rat_vit_Ctc_1000um_2h_1 | Steatotic | Steatotic | Steatotic_low | low | Steatotic_2h | Low | Steatotic_2h_Low | Steatotic_2h_Low | Steatotic_2h_Low | 3017722025 | Rattus norvegicus | 5005161LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | carbon tetrachloride | Low _ carbon tetrachloride | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5138031LRA | 5138031LRA:biotin | biotin | P_MTAB_23069 | 3017289026 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.7.zip | carbon tetrachloride | ChEMBL | CHEMBL44814 | carbon tetrachloride | 1.0e+03 | micromolar | low | 2 | hour | |||
| 003017289027.CEL | TG_rat_vit_Ctc_1000um_2h_2 | Steatotic | Steatotic | Steatotic_low | low | Steatotic_2h | Low | Steatotic_2h_Low | Steatotic_2h_Low | Steatotic_2h_Low | 3017722026 | Rattus norvegicus | 5005162LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | carbon tetrachloride | Low _ carbon tetrachloride | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5138032LRA | 5138032LRA:biotin | biotin | P_MTAB_23069 | 3017289027 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.7.zip | carbon tetrachloride | ChEMBL | CHEMBL44814 | carbon tetrachloride | 1.0e+03 | micromolar | low | 2 | hour | |||
| 003017289012.CEL | TG_rat_vit_Ctc_1000um_8h_1 | Steatotic | Steatotic | Steatotic_low | low | Steatotic_8h | Low | Steatotic_8h_Low | Steatotic_8h_Low | Steatotic_8h_Low | 3017723001 | Rattus norvegicus | 5005181LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | carbon tetrachloride | Low _ carbon tetrachloride | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5138041LRA | 5138041LRA:biotin | biotin | P_MTAB_23069 | 3017289012 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.7.zip | carbon tetrachloride | ChEMBL | CHEMBL44814 | carbon tetrachloride | 1.0e+03 | micromolar | low | 8 | hour | |||
| 003017289013.CEL | TG_rat_vit_Ctc_1000um_8h_2 | Steatotic | Steatotic | Steatotic_low | low | Steatotic_8h | Low | Steatotic_8h_Low | Steatotic_8h_Low | Steatotic_8h_Low | 3017723002 | Rattus norvegicus | 5005182LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | carbon tetrachloride | Low _ carbon tetrachloride | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5138042LRA | 5138042LRA:biotin | biotin | P_MTAB_23069 | 3017289013 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.7.zip | carbon tetrachloride | ChEMBL | CHEMBL44814 | carbon tetrachloride | 1.0e+03 | micromolar | low | 8 | hour | |||
| 003017289020.CEL | TG_rat_vit_Ctc_1000um_24h_1 | Steatotic | Steatotic | Steatotic_low | low | Steatotic_24h | Low | Steatotic_24h_Low | Steatotic_24h_Low | Steatotic_24h_Low | 3017723009 | Rattus norvegicus | 5005191LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | carbon tetrachloride | Low _ carbon tetrachloride | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5138051LRA | 5138051LRA:biotin | biotin | P_MTAB_23069 | 3017289020 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.7.zip | carbon tetrachloride | ChEMBL | CHEMBL44814 | carbon tetrachloride | 1.0e+03 | micromolar | low | 24 | hour | |||
| 003017289021.CEL | TG_rat_vit_Ctc_1000um_24h_2 | Steatotic | Steatotic | Steatotic_low | low | Steatotic_24h | Low | Steatotic_24h_Low | Steatotic_24h_Low | Steatotic_24h_Low | 3017723010 | Rattus norvegicus | 5005192LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | carbon tetrachloride | Low _ carbon tetrachloride | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5138052LRA | 5138052LRA:biotin | biotin | P_MTAB_23069 | 3017289021 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.7.zip | carbon tetrachloride | ChEMBL | CHEMBL44814 | carbon tetrachloride | 1.0e+03 | micromolar | low | 24 | hour | |||
| 003017305022.CEL | TG_rat_vit_Ctc_3000um_2h_1 | Steatotic | Steatotic | Steatotic_middle | middle | Steatotic_2h | Middle | Steatotic_2h_Middle | Steatotic_2h_Middle | Steatotic_2h_MiddleHigh | Steatotic_2h_MiddleHigh | 3017722027 | Rattus norvegicus | 5005211LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | carbon tetrachloride | Middle _ carbon tetrachloride | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5149091LRA | 5149091LRA:biotin | biotin | P_MTAB_23069 | 3017305022 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.7.zip | carbon tetrachloride | ChEMBL | CHEMBL44814 | carbon tetrachloride | 3.0e+03 | micromolar | middle | 2 | hour | ||
| 003017305023.CEL | TG_rat_vit_Ctc_3000um_2h_2 | Steatotic | Steatotic | Steatotic_middle | middle | Steatotic_2h | Middle | Steatotic_2h_Middle | Steatotic_2h_Middle | Steatotic_2h_MiddleHigh | Steatotic_2h_MiddleHigh | 3017722028 | Rattus norvegicus | 5005212LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | carbon tetrachloride | Middle _ carbon tetrachloride | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5149092LRA | 5149092LRA:biotin | biotin | P_MTAB_23069 | 3017305023 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.7.zip | carbon tetrachloride | ChEMBL | CHEMBL44814 | carbon tetrachloride | 3.0e+03 | micromolar | middle | 2 | hour | ||
| 003017305008.CEL | TG_rat_vit_Ctc_3000um_8h_1 | Steatotic | Steatotic | Steatotic_middle | middle | Steatotic_8h | Middle | Steatotic_8h_Middle | Steatotic_8h_Middle | Steatotic_8h_MiddleHigh | Steatotic_8h_MiddleHigh | 3017723003 | Rattus norvegicus | 5005231LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | carbon tetrachloride | Middle _ carbon tetrachloride | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5149101LRA | 5149101LRA:biotin | biotin | P_MTAB_23069 | 3017305008 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.7.zip | carbon tetrachloride | ChEMBL | CHEMBL44814 | carbon tetrachloride | 3.0e+03 | micromolar | middle | 8 | hour | ||
| 003017305009.CEL | TG_rat_vit_Ctc_3000um_8h_2 | Steatotic | Steatotic | Steatotic_middle | middle | Steatotic_8h | Middle | Steatotic_8h_Middle | Steatotic_8h_Middle | Steatotic_8h_MiddleHigh | Steatotic_8h_MiddleHigh | 3017723004 | Rattus norvegicus | 5005232LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | carbon tetrachloride | Middle _ carbon tetrachloride | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5149102LRA | 5149102LRA:biotin | biotin | P_MTAB_23069 | 3017305009 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.7.zip | carbon tetrachloride | ChEMBL | CHEMBL44814 | carbon tetrachloride | 3.0e+03 | micromolar | middle | 8 | hour | ||
| 003017305016.CEL | TG_rat_vit_Ctc_3000um_24h_1 | Steatotic | Steatotic | Steatotic_middle | middle | Steatotic_24h | Middle | Steatotic_24h_Middle | Steatotic_24h_Middle | Steatotic_24h_MiddleHigh | Steatotic_24h_MiddleHigh | 3017723011 | Rattus norvegicus | 5005241LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | carbon tetrachloride | Middle _ carbon tetrachloride | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5149111LRA | 5149111LRA:biotin | biotin | P_MTAB_23069 | 3017305016 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.7.zip | carbon tetrachloride | ChEMBL | CHEMBL44814 | carbon tetrachloride | 3.0e+03 | micromolar | middle | 24 | hour | ||
| 003017305017.CEL | TG_rat_vit_Ctc_3000um_24h_2 | Steatotic | Steatotic | Steatotic_middle | middle | Steatotic_24h | Middle | Steatotic_24h_Middle | Steatotic_24h_Middle | Steatotic_24h_MiddleHigh | Steatotic_24h_MiddleHigh | 3017723012 | Rattus norvegicus | 5005242LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | carbon tetrachloride | Middle _ carbon tetrachloride | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5149112LRA | 5149112LRA:biotin | biotin | P_MTAB_23069 | 3017305017 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.7.zip | carbon tetrachloride | ChEMBL | CHEMBL44814 | carbon tetrachloride | 3.0e+03 | micromolar | middle | 24 | hour | ||
| 003017343019.CEL | TG_rat_vit_Ctc_10000um_8h_1 | Steatotic | Steatotic | Steatotic_high | high | Steatotic_8h | High | Steatotic_8h_High | Steatotic_8h_High | Steatotic_8h_MiddleHigh | Steatotic_8h_MiddleHigh | 3017723005 | Rattus norvegicus | 5005281LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | carbon tetrachloride | High _ carbon tetrachloride | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5175121LRA | 5175121LRA:biotin | biotin | P_MTAB_23069 | 3017343019 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.7.zip | carbon tetrachloride | ChEMBL | CHEMBL44814 | carbon tetrachloride | 1.0e+04 | micromolar | high | 8 | hour | ||
| 003017343020.CEL | TG_rat_vit_Ctc_10000um_8h_2 | Steatotic | Steatotic | Steatotic_high | high | Steatotic_8h | High | Steatotic_8h_High | Steatotic_8h_High | Steatotic_8h_MiddleHigh | Steatotic_8h_MiddleHigh | 3017723006 | Rattus norvegicus | 5005282LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | carbon tetrachloride | High _ carbon tetrachloride | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5175122LRA | 5175122LRA:biotin | biotin | P_MTAB_23069 | 3017343020 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.7.zip | carbon tetrachloride | ChEMBL | CHEMBL44814 | carbon tetrachloride | 1.0e+04 | micromolar | high | 8 | hour | ||
| 003017077026.CEL | TG_rat_vit_Col_ctl_2h_1 | Non_Steatotic | Non_steatotic | Non_steatotic_none | none | Non_steatotic_2h | Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | 3017329003 | Rattus norvegicus | 5168011LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | colchicine | Control _ colchicine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5039011LRA | 5039011LRA:biotin | biotin | P_MTAB_23069 | 3017077026 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip | colchicine | ChEMBL | CHEMBL107 | colchicine | NA | none | 2 | hour | |
| 003017077027.CEL | TG_rat_vit_Col_ctl_2h_2 | Non_Steatotic | Non_steatotic | Non_steatotic_none | none | Non_steatotic_2h | Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | 3017329004 | Rattus norvegicus | 5168012LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | colchicine | Control _ colchicine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5039012LRA | 5039012LRA:biotin | biotin | P_MTAB_23069 | 3017077027 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip | colchicine | ChEMBL | CHEMBL107 | colchicine | NA | none | 2 | hour | |
| 003017078004.CEL | TG_rat_vit_Col_ctl_8h_1 | Non_Steatotic | Non_steatotic | Non_steatotic_none | none | Non_steatotic_8h | Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | 3017329011 | Rattus norvegicus | 5168021LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | colchicine | Control _ colchicine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5039021LRA | 5039021LRA:biotin | biotin | P_MTAB_23069 | 3017078004 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip | colchicine | ChEMBL | CHEMBL107 | colchicine | NA | none | 8 | hour | |
| 003017078005.CEL | TG_rat_vit_Col_ctl_8h_2 | Non_Steatotic | Non_steatotic | Non_steatotic_none | none | Non_steatotic_8h | Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | 3017329012 | Rattus norvegicus | 5168022LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | colchicine | Control _ colchicine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5039022LRA | 5039022LRA:biotin | biotin | P_MTAB_23069 | 3017078005 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip | colchicine | ChEMBL | CHEMBL107 | colchicine | NA | none | 8 | hour | |
| 003017078012.CEL | TG_rat_vit_Col_ctl_24h_1 | Non_Steatotic | Non_steatotic | Non_steatotic_none | none | Non_steatotic_24h | Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | 3017329019 | Rattus norvegicus | 5168031LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | colchicine | Control _ colchicine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5039031LRA | 5039031LRA:biotin | biotin | P_MTAB_23069 | 3017078012 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip | colchicine | ChEMBL | CHEMBL107 | colchicine | NA | none | 24 | hour | |
| 003017078013.CEL | TG_rat_vit_Col_ctl_24h_2 | Non_Steatotic | Non_steatotic | Non_steatotic_none | none | Non_steatotic_24h | Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | 3017329020 | Rattus norvegicus | 5168032LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | colchicine | Control _ colchicine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5039032LRA | 5039032LRA:biotin | biotin | P_MTAB_23069 | 3017078013 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip | colchicine | ChEMBL | CHEMBL107 | colchicine | NA | none | 24 | hour | |
| 003017547029.CEL | TG_rat_vit_Col_200um_2h_1 | Non_Steatotic | Non_steatotic | Non_steatotic_low | none | Non_steatotic_2h | Low | Non_steatotic_2h_Low | Non_steatotic_2h_Control | Non_steatotic_2h_Low | 3017329005 | Rattus norvegicus | 5168041LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | colchicine | Low _ colchicine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5204031LRA | 5204031LRA:biotin | biotin | P_MTAB_23069 | 3017547029 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip | colchicine | ChEMBL | CHEMBL107 | colchicine | 2.0e+02 | micromolar | low | 2 | hour | |||
| 003017547030.CEL | TG_rat_vit_Col_200um_2h_2 | Non_Steatotic | Non_steatotic | Non_steatotic_low | none | Non_steatotic_2h | Low | Non_steatotic_2h_Low | Non_steatotic_2h_Control | Non_steatotic_2h_Low | 3017329006 | Rattus norvegicus | 5168042LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | colchicine | Low _ colchicine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5204032LRA | 5204032LRA:biotin | biotin | P_MTAB_23069 | 3017547030 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip | colchicine | ChEMBL | CHEMBL107 | colchicine | 2.0e+02 | micromolar | low | 2 | hour | |||
| 003017547015.CEL | TG_rat_vit_Col_200um_8h_1 | Non_Steatotic | Non_steatotic | Non_steatotic_low | none | Non_steatotic_8h | Low | Non_steatotic_8h_Low | Non_steatotic_8h_Control | Non_steatotic_8h_Low | 3017329013 | Rattus norvegicus | 5168051LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | colchicine | Low _ colchicine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5204041LRA | 5204041LRA:biotin | biotin | P_MTAB_23069 | 3017547015 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip | colchicine | ChEMBL | CHEMBL107 | colchicine | 2.0e+02 | micromolar | low | 8 | hour | |||
| 003017547016.CEL | TG_rat_vit_Col_200um_8h_2 | Non_Steatotic | Non_steatotic | Non_steatotic_low | none | Non_steatotic_8h | Low | Non_steatotic_8h_Low | Non_steatotic_8h_Control | Non_steatotic_8h_Low | 3017329014 | Rattus norvegicus | 5168052LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | colchicine | Low _ colchicine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5204042LRA | 5204042LRA:biotin | biotin | P_MTAB_23069 | 3017547016 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip | colchicine | ChEMBL | CHEMBL107 | colchicine | 2.0e+02 | micromolar | low | 8 | hour | |||
| 003017547023.CEL | TG_rat_vit_Col_200um_24h_1 | Non_Steatotic | Non_steatotic | Non_steatotic_low | none | Non_steatotic_24h | Low | Non_steatotic_24h_Low | Non_steatotic_24h_Control | Non_steatotic_24h_Low | 3017329021 | Rattus norvegicus | 5168061LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | colchicine | Low _ colchicine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5204051LRA | 5204051LRA:biotin | biotin | P_MTAB_23069 | 3017547023 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip | colchicine | ChEMBL | CHEMBL107 | colchicine | 2.0e+02 | micromolar | low | 24 | hour | |||
| 003017547024.CEL | TG_rat_vit_Col_200um_24h_2 | Non_Steatotic | Non_steatotic | Non_steatotic_low | none | Non_steatotic_24h | Low | Non_steatotic_24h_Low | Non_steatotic_24h_Control | Non_steatotic_24h_Low | 3017329022 | Rattus norvegicus | 5168062LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | colchicine | Low _ colchicine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5204052LRA | 5204052LRA:biotin | biotin | P_MTAB_23069 | 3017547024 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip | colchicine | ChEMBL | CHEMBL107 | colchicine | 2.0e+02 | micromolar | low | 24 | hour | |||
| 003017289028.CEL | TG_rat_vit_Col_1000um_2h_1 | Non_Steatotic | Non_steatotic | Non_steatotic_middle | none | Non_steatotic_2h | Middle | Non_steatotic_2h_Middle | Non_steatotic_2h_Control | Non_steatotic_2h_MiddleHigh | Non_steatotic_2h_Control | 3017329007 | Rattus norvegicus | 5168071LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | colchicine | Middle _ colchicine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5138061LRA | 5138061LRA:biotin | biotin | P_MTAB_23069 | 3017289028 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip | colchicine | ChEMBL | CHEMBL107 | colchicine | 1.0e+03 | micromolar | middle | 2 | hour | ||
| 003017289029.CEL | TG_rat_vit_Col_1000um_2h_2 | Non_Steatotic | Non_steatotic | Non_steatotic_middle | none | Non_steatotic_2h | Middle | Non_steatotic_2h_Middle | Non_steatotic_2h_Control | Non_steatotic_2h_MiddleHigh | Non_steatotic_2h_Control | 3017329008 | Rattus norvegicus | 5168072LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | colchicine | Middle _ colchicine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5138062LRA | 5138062LRA:biotin | biotin | P_MTAB_23069 | 3017289029 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip | colchicine | ChEMBL | CHEMBL107 | colchicine | 1.0e+03 | micromolar | middle | 2 | hour | ||
| 003017289014.CEL | TG_rat_vit_Col_1000um_8h_1 | Non_Steatotic | Non_steatotic | Non_steatotic_middle | none | Non_steatotic_8h | Middle | Non_steatotic_8h_Middle | Non_steatotic_8h_Control | Non_steatotic_8h_MiddleHigh | Non_steatotic_8h_Control | 3017329015 | Rattus norvegicus | 5168081LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | colchicine | Middle _ colchicine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5138071LRA | 5138071LRA:biotin | biotin | P_MTAB_23069 | 3017289014 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip | colchicine | ChEMBL | CHEMBL107 | colchicine | 1.0e+03 | micromolar | middle | 8 | hour | ||
| 003017289015.CEL | TG_rat_vit_Col_1000um_8h_2 | Non_Steatotic | Non_steatotic | Non_steatotic_middle | none | Non_steatotic_8h | Middle | Non_steatotic_8h_Middle | Non_steatotic_8h_Control | Non_steatotic_8h_MiddleHigh | Non_steatotic_8h_Control | 3017329016 | Rattus norvegicus | 5168082LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | colchicine | Middle _ colchicine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5138072LRA | 5138072LRA:biotin | biotin | P_MTAB_23069 | 3017289015 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip | colchicine | ChEMBL | CHEMBL107 | colchicine | 1.0e+03 | micromolar | middle | 8 | hour | ||
| 003017289022.CEL | TG_rat_vit_Col_1000um_24h_1 | Non_Steatotic | Non_steatotic | Non_steatotic_middle | none | Non_steatotic_24h | Middle | Non_steatotic_24h_Middle | Non_steatotic_24h_Control | Non_steatotic_24h_MiddleHigh | Non_steatotic_24h_Control | 3017329023 | Rattus norvegicus | 5168091LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | colchicine | Middle _ colchicine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5138081LRA | 5138081LRA:biotin | biotin | P_MTAB_23069 | 3017289022 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip | colchicine | ChEMBL | CHEMBL107 | colchicine | 1.0e+03 | micromolar | middle | 24 | hour | ||
| 003017289023.CEL | TG_rat_vit_Col_1000um_24h_2 | Non_Steatotic | Non_steatotic | Non_steatotic_middle | none | Non_steatotic_24h | Middle | Non_steatotic_24h_Middle | Non_steatotic_24h_Control | Non_steatotic_24h_MiddleHigh | Non_steatotic_24h_Control | 3017329024 | Rattus norvegicus | 5168092LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | colchicine | Middle _ colchicine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5138082LRA | 5138082LRA:biotin | biotin | P_MTAB_23069 | 3017289023 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip | colchicine | ChEMBL | CHEMBL107 | colchicine | 1.0e+03 | micromolar | middle | 24 | hour | ||
| 003017297019.CEL | TG_rat_vit_Col_5000um_2h_1 | Non_Steatotic | Non_steatotic | Non_steatotic_high | none | Non_steatotic_2h | High | Non_steatotic_2h_High | Non_steatotic_2h_Control | Non_steatotic_2h_MiddleHigh | Non_steatotic_2h_Control | 3017329009 | Rattus norvegicus | 5168101LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | colchicine | High _ colchicine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5146061LRA | 5146061LRA:biotin | biotin | P_MTAB_23069 | 3017297019 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip | colchicine | ChEMBL | CHEMBL107 | colchicine | 5.0e+03 | micromolar | high | 2 | hour | ||
| 003017297020.CEL | TG_rat_vit_Col_5000um_2h_2 | Non_Steatotic | Non_steatotic | Non_steatotic_high | none | Non_steatotic_2h | High | Non_steatotic_2h_High | Non_steatotic_2h_Control | Non_steatotic_2h_MiddleHigh | Non_steatotic_2h_Control | 3017329010 | Rattus norvegicus | 5168102LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | colchicine | High _ colchicine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5146062LRA | 5146062LRA:biotin | biotin | P_MTAB_23069 | 3017297020 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip | colchicine | ChEMBL | CHEMBL107 | colchicine | 5.0e+03 | micromolar | high | 2 | hour | ||
| 003017297005.CEL | TG_rat_vit_Col_5000um_8h_1 | Non_Steatotic | Non_steatotic | Non_steatotic_high | none | Non_steatotic_8h | High | Non_steatotic_8h_High | Non_steatotic_8h_Control | Non_steatotic_8h_MiddleHigh | Non_steatotic_8h_Control | 3017329017 | Rattus norvegicus | 5168111LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | colchicine | High _ colchicine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5146071LRA | 5146071LRA:biotin | biotin | P_MTAB_23069 | 3017297005 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip | colchicine | ChEMBL | CHEMBL107 | colchicine | 5.0e+03 | micromolar | high | 8 | hour | ||
| 003017297006.CEL | TG_rat_vit_Col_5000um_8h_2 | Non_Steatotic | Non_steatotic | Non_steatotic_high | none | Non_steatotic_8h | High | Non_steatotic_8h_High | Non_steatotic_8h_Control | Non_steatotic_8h_MiddleHigh | Non_steatotic_8h_Control | 3017329018 | Rattus norvegicus | 5168112LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | colchicine | High _ colchicine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5146072LRA | 5146072LRA:biotin | biotin | P_MTAB_23069 | 3017297006 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.12.zip | colchicine | ChEMBL | CHEMBL107 | colchicine | 5.0e+03 | micromolar | high | 8 | hour | ||
| 003017297013.CEL | TG_rat_vit_Col_5000um_24h_1 | Non_Steatotic | Non_steatotic | Non_steatotic_high | none | Non_steatotic_24h | High | Non_steatotic_24h_High | Non_steatotic_24h_Control | Non_steatotic_24h_MiddleHigh | Non_steatotic_24h_Control | 3017329025 | Rattus norvegicus | 5168121LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | colchicine | High _ colchicine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5146081LRA | 5146081LRA:biotin | biotin | P_MTAB_23069 | 3017297013 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.12.zip | colchicine | ChEMBL | CHEMBL107 | colchicine | 5.0e+03 | micromolar | high | 24 | hour | ||
| 003017297014.CEL | TG_rat_vit_Col_5000um_24h_2 | Non_Steatotic | Non_steatotic | Non_steatotic_high | none | Non_steatotic_24h | High | Non_steatotic_24h_High | Non_steatotic_24h_Control | Non_steatotic_24h_MiddleHigh | Non_steatotic_24h_Control | 3017329026 | Rattus norvegicus | 5168122LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | colchicine | High _ colchicine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5146082LRA | 5146082LRA:biotin | biotin | P_MTAB_23069 | 3017297014 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.12.zip | colchicine | ChEMBL | CHEMBL107 | colchicine | 5.0e+03 | micromolar | high | 24 | hour | ||
| 003017388019.CEL | TG_rat_vit_Imi_ctl_2h_1 | Non_Steatotic | Non_steatotic | Non_steatotic_none | none | Non_steatotic_2h | Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | 3017216023 | Rattus norvegicus | 5120011LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | imipramine | Control _ imipramine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5188041LRA | 5188041LRA:biotin | biotin | P_MTAB_23069 | 3017388019 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.21.zip | imipramine | ChEMBL | CHEMBL11 | imipramine | NA | none | 2 | hour | |
| 003017388020.CEL | TG_rat_vit_Imi_ctl_2h_2 | Non_Steatotic | Non_steatotic | Non_steatotic_none | none | Non_steatotic_2h | Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | 3017216024 | Rattus norvegicus | 5120012LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | imipramine | Control _ imipramine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5188042LRA | 5188042LRA:biotin | biotin | P_MTAB_23069 | 3017388020 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.21.zip | imipramine | ChEMBL | CHEMBL11 | imipramine | NA | none | 2 | hour | |
| 003017388027.CEL | TG_rat_vit_Imi_ctl_8h_1 | Non_Steatotic | Non_steatotic | Non_steatotic_none | none | Non_steatotic_8h | Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | 3017217001 | Rattus norvegicus | 5120021LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | imipramine | Control _ imipramine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5188051LRA | 5188051LRA:biotin | biotin | P_MTAB_23069 | 3017388027 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.21.zip | imipramine | ChEMBL | CHEMBL11 | imipramine | NA | none | 8 | hour | |
| 003017388028.CEL | TG_rat_vit_Imi_ctl_8h_2 | Non_Steatotic | Non_steatotic | Non_steatotic_none | none | Non_steatotic_8h | Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | 3017217002 | Rattus norvegicus | 5120022LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | imipramine | Control _ imipramine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5188052LRA | 5188052LRA:biotin | biotin | P_MTAB_23069 | 3017388028 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.21.zip | imipramine | ChEMBL | CHEMBL11 | imipramine | NA | none | 8 | hour | |
| 003017389005.CEL | TG_rat_vit_Imi_ctl_24h_1 | Non_Steatotic | Non_steatotic | Non_steatotic_none | none | Non_steatotic_24h | Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | 3017217009 | Rattus norvegicus | 5120031LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | imipramine | Control _ imipramine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5188061LRA | 5188061LRA:biotin | biotin | P_MTAB_23069 | 3017389005 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.21.zip | imipramine | ChEMBL | CHEMBL11 | imipramine | NA | none | 24 | hour | |
| 003017389006.CEL | TG_rat_vit_Imi_ctl_24h_2 | Non_Steatotic | Non_steatotic | Non_steatotic_none | none | Non_steatotic_24h | Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | 3017217010 | Rattus norvegicus | 5120032LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | imipramine | Control _ imipramine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5188062LRA | 5188062LRA:biotin | biotin | P_MTAB_23069 | 3017389006 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.21.zip | imipramine | ChEMBL | CHEMBL11 | imipramine | NA | none | 24 | hour | |
| 003017145017.CEL | TG_rat_vit_Imi_4um_2h_1 | Non_Steatotic | Non_steatotic | Non_steatotic_low | none | Non_steatotic_2h | Low | Non_steatotic_2h_Low | Non_steatotic_2h_Control | Non_steatotic_2h_Low | 3017216025 | Rattus norvegicus | 5120041LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | imipramine | Low _ imipramine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5061031LRA | 5061031LRA:biotin | biotin | P_MTAB_23069 | 3017145017 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.21.zip | imipramine | ChEMBL | CHEMBL11 | imipramine | 4.0e+00 | micromolar | low | 2 | hour | |||
| 003017145018.CEL | TG_rat_vit_Imi_4um_2h_2 | Non_Steatotic | Non_steatotic | Non_steatotic_low | none | Non_steatotic_2h | Low | Non_steatotic_2h_Low | Non_steatotic_2h_Control | Non_steatotic_2h_Low | 3017216026 | Rattus norvegicus | 5120042LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | imipramine | Low _ imipramine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5061032LRA | 5061032LRA:biotin | biotin | P_MTAB_23069 | 3017145018 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.21.zip | imipramine | ChEMBL | CHEMBL11 | imipramine | 4.0e+00 | micromolar | low | 2 | hour | |||
| 003017145003.CEL | TG_rat_vit_Imi_4um_8h_1 | Non_Steatotic | Non_steatotic | Non_steatotic_low | none | Non_steatotic_8h | Low | Non_steatotic_8h_Low | Non_steatotic_8h_Control | Non_steatotic_8h_Low | 3017217003 | Rattus norvegicus | 5120051LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | imipramine | Low _ imipramine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5061041LRA | 5061041LRA:biotin | biotin | P_MTAB_23069 | 3017145003 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.21.zip | imipramine | ChEMBL | CHEMBL11 | imipramine | 4.0e+00 | micromolar | low | 8 | hour | |||
| 003017145004.CEL | TG_rat_vit_Imi_4um_8h_2 | Non_Steatotic | Non_steatotic | Non_steatotic_low | none | Non_steatotic_8h | Low | Non_steatotic_8h_Low | Non_steatotic_8h_Control | Non_steatotic_8h_Low | 3017217004 | Rattus norvegicus | 5120052LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | imipramine | Low _ imipramine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5061042LRA | 5061042LRA:biotin | biotin | P_MTAB_23069 | 3017145004 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.22.zip | imipramine | ChEMBL | CHEMBL11 | imipramine | 4.0e+00 | micromolar | low | 8 | hour | |||
| 003017145011.CEL | TG_rat_vit_Imi_4um_24h_1 | Non_Steatotic | Non_steatotic | Non_steatotic_low | none | Non_steatotic_24h | Low | Non_steatotic_24h_Low | Non_steatotic_24h_Control | Non_steatotic_24h_Low | 3017217011 | Rattus norvegicus | 5120061LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | imipramine | Low _ imipramine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5061051LRA | 5061051LRA:biotin | biotin | P_MTAB_23069 | 3017145011 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.22.zip | imipramine | ChEMBL | CHEMBL11 | imipramine | 4.0e+00 | micromolar | low | 24 | hour | |||
| 003017145012.CEL | TG_rat_vit_Imi_4um_24h_2 | Non_Steatotic | Non_steatotic | Non_steatotic_low | none | Non_steatotic_24h | Low | Non_steatotic_24h_Low | Non_steatotic_24h_Control | Non_steatotic_24h_Low | 3017217012 | Rattus norvegicus | 5120062LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | imipramine | Low _ imipramine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5061052LRA | 5061052LRA:biotin | biotin | P_MTAB_23069 | 3017145012 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.22.zip | imipramine | ChEMBL | CHEMBL11 | imipramine | 4.0e+00 | micromolar | low | 24 | hour | |||
| 003017127016.CEL | TG_rat_vit_Imi_20um_2h_1 | Non_Steatotic | Non_steatotic | Non_steatotic_middle | none | Non_steatotic_2h | Middle | Non_steatotic_2h_Middle | Non_steatotic_2h_Control | Non_steatotic_2h_MiddleHigh | Non_steatotic_2h_MiddleHigh | 3017216027 | Rattus norvegicus | 5120071LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | imipramine | Middle _ imipramine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5053121LRA | 5053121LRA:biotin | biotin | P_MTAB_23069 | 3017127016 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.22.zip | imipramine | ChEMBL | CHEMBL11 | imipramine | 2.0e+01 | micromolar | middle | 2 | hour | ||
| 003017127017.CEL | TG_rat_vit_Imi_20um_2h_2 | Non_Steatotic | Non_steatotic | Non_steatotic_middle | none | Non_steatotic_2h | Middle | Non_steatotic_2h_Middle | Non_steatotic_2h_Control | Non_steatotic_2h_MiddleHigh | Non_steatotic_2h_MiddleHigh | 3017216028 | Rattus norvegicus | 5120072LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | imipramine | Middle _ imipramine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5053122LRA | 5053122LRA:biotin | biotin | P_MTAB_23069 | 3017127017 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.22.zip | imipramine | ChEMBL | CHEMBL11 | imipramine | 2.0e+01 | micromolar | middle | 2 | hour | ||
| 003017111001.CEL | TG_rat_vit_Imi_20um_8h_1 | Non_Steatotic | Non_steatotic | Non_steatotic_middle | none | Non_steatotic_8h | Middle | Non_steatotic_8h_Middle | Non_steatotic_8h_Control | Non_steatotic_8h_MiddleHigh | Non_steatotic_8h_MiddleHigh | 3017217005 | Rattus norvegicus | 5120081LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | imipramine | Middle _ imipramine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5046011LRA | 5046011LRA:biotin | biotin | P_MTAB_23069 | 3017111001 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.22.zip | imipramine | ChEMBL | CHEMBL11 | imipramine | 2.0e+01 | micromolar | middle | 8 | hour | ||
| 003017111002.CEL | TG_rat_vit_Imi_20um_8h_2 | Non_Steatotic | Non_steatotic | Non_steatotic_middle | none | Non_steatotic_8h | Middle | Non_steatotic_8h_Middle | Non_steatotic_8h_Control | Non_steatotic_8h_MiddleHigh | Non_steatotic_8h_MiddleHigh | 3017217006 | Rattus norvegicus | 5120082LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | imipramine | Middle _ imipramine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5046012LRA | 5046012LRA:biotin | biotin | P_MTAB_23069 | 3017111002 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.22.zip | imipramine | ChEMBL | CHEMBL11 | imipramine | 2.0e+01 | micromolar | middle | 8 | hour | ||
| 003017111009.CEL | TG_rat_vit_Imi_20um_24h_1 | Non_Steatotic | Non_steatotic | Non_steatotic_middle | none | Non_steatotic_24h | Middle | Non_steatotic_24h_Middle | Non_steatotic_24h_Control | Non_steatotic_24h_MiddleHigh | Non_steatotic_24h_MiddleHigh | 3017217013 | Rattus norvegicus | 5120091LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | imipramine | Middle _ imipramine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5046021LRA | 5046021LRA:biotin | biotin | P_MTAB_23069 | 3017111009 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.22.zip | imipramine | ChEMBL | CHEMBL11 | imipramine | 2.0e+01 | micromolar | middle | 24 | hour | ||
| 003017111010.CEL | TG_rat_vit_Imi_20um_24h_2 | Non_Steatotic | Non_steatotic | Non_steatotic_middle | none | Non_steatotic_24h | Middle | Non_steatotic_24h_Middle | Non_steatotic_24h_Control | Non_steatotic_24h_MiddleHigh | Non_steatotic_24h_MiddleHigh | 3017217014 | Rattus norvegicus | 5120092LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | imipramine | Middle _ imipramine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5046022LRA | 5046022LRA:biotin | biotin | P_MTAB_23069 | 3017111010 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.22.zip | imipramine | ChEMBL | CHEMBL11 | imipramine | 2.0e+01 | micromolar | middle | 24 | hour | ||
| 003017531018.CEL | TG_rat_vit_Imi_100um_2h_1 | Non_Steatotic | Non_steatotic | Non_steatotic_high | none | Non_steatotic_2h | High | Non_steatotic_2h_High | Non_steatotic_2h_Control | Non_steatotic_2h_MiddleHigh | Non_steatotic_2h_MiddleHigh | 3017216029 | Rattus norvegicus | 5120101LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | imipramine | High _ imipramine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5207121LRA | 5207121LRA:biotin | biotin | P_MTAB_23069 | 3017531018 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.22.zip | imipramine | ChEMBL | CHEMBL11 | imipramine | 1.0e+02 | micromolar | high | 2 | hour | ||
| 003017531019.CEL | TG_rat_vit_Imi_100um_2h_2 | Non_Steatotic | Non_steatotic | Non_steatotic_high | none | Non_steatotic_2h | High | Non_steatotic_2h_High | Non_steatotic_2h_Control | Non_steatotic_2h_MiddleHigh | Non_steatotic_2h_MiddleHigh | 3017216030 | Rattus norvegicus | 5120102LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | imipramine | High _ imipramine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5207122LRA | 5207122LRA:biotin | biotin | P_MTAB_23069 | 3017531019 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.22.zip | imipramine | ChEMBL | CHEMBL11 | imipramine | 1.0e+02 | micromolar | high | 2 | hour | ||
| 003017026016.CEL | TG_rat_vit_Imi_100um_8h_1 | Non_Steatotic | Non_steatotic | Non_steatotic_high | none | Non_steatotic_8h | High | Non_steatotic_8h_High | Non_steatotic_8h_Control | Non_steatotic_8h_MiddleHigh | Non_steatotic_8h_MiddleHigh | 3017217007 | Rattus norvegicus | 5120111LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | imipramine | High _ imipramine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5015011LRA | 5015011LRA:biotin | biotin | P_MTAB_23069 | 3017026016 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.22.zip | imipramine | ChEMBL | CHEMBL11 | imipramine | 1.0e+02 | micromolar | high | 8 | hour | ||
| 003017026017.CEL | TG_rat_vit_Imi_100um_8h_2 | Non_Steatotic | Non_steatotic | Non_steatotic_high | none | Non_steatotic_8h | High | Non_steatotic_8h_High | Non_steatotic_8h_Control | Non_steatotic_8h_MiddleHigh | Non_steatotic_8h_MiddleHigh | 3017217008 | Rattus norvegicus | 5120112LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | imipramine | High _ imipramine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5015012LRA | 5015012LRA:biotin | biotin | P_MTAB_23069 | 3017026017 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.22.zip | imipramine | ChEMBL | CHEMBL11 | imipramine | 1.0e+02 | micromolar | high | 8 | hour | ||
| 003017026024.CEL | TG_rat_vit_Imi_100um_24h_1 | Non_Steatotic | Non_steatotic | Non_steatotic_high | none | Non_steatotic_24h | High | Non_steatotic_24h_High | Non_steatotic_24h_Control | Non_steatotic_24h_MiddleHigh | Non_steatotic_24h_MiddleHigh | 3017217015 | Rattus norvegicus | 5120121LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | imipramine | High _ imipramine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5015021LRA | 5015021LRA:biotin | biotin | P_MTAB_23069 | 3017026024 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.22.zip | imipramine | ChEMBL | CHEMBL11 | imipramine | 1.0e+02 | micromolar | high | 24 | hour | ||
| 003017026025.CEL | TG_rat_vit_Imi_100um_24h_2 | Non_Steatotic | Non_steatotic | Non_steatotic_high | none | Non_steatotic_24h | High | Non_steatotic_24h_High | Non_steatotic_24h_Control | Non_steatotic_24h_MiddleHigh | Non_steatotic_24h_Control | 3017217016 | Rattus norvegicus | 5120122LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | imipramine | High _ imipramine | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5015022LRA | 5015022LRA:biotin | biotin | P_MTAB_23069 | 3017026025 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.22.zip | imipramine | ChEMBL | CHEMBL11 | imipramine | 1.0e+02 | micromolar | high | 24 | hour | ||
| 003017030008.CEL | TG_rat_vit_Tam_Ctl_2h_1 | Steatotic | Non_steatotic | Non_steatotic_none | none | Non_steatotic_2h | Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | 3017148020 | Rattus norvegicus | 5060011LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | tamoxifen | Control _ tamoxifen | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5019031LRA | 5019031LRA:biotin | biotin | P_MTAB_23069 | 3017030008 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip | tamoxifen | ChEMBL | CHEMBL83 | tamoxifen | NA | none | 2 | hour | |
| 003017030009.CEL | TG_rat_vit_Tam_Ctl_2h_2 | Steatotic | Non_steatotic | Non_steatotic_none | none | Non_steatotic_2h | Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | 3017148021 | Rattus norvegicus | 5060012LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | tamoxifen | Control _ tamoxifen | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5019032LRA | 5019032LRA:biotin | biotin | P_MTAB_23069 | 3017030009 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip | tamoxifen | ChEMBL | CHEMBL83 | tamoxifen | NA | none | 2 | hour | |
| 003017029024.CEL | TG_rat_vit_Tam_Ctl_8h_1 | Steatotic | Non_steatotic | Non_steatotic_none | none | Non_steatotic_8h | Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | 3017148028 | Rattus norvegicus | 5060021LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | tamoxifen | Control _ tamoxifen | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5019041LRA | 5019041LRA:biotin | biotin | P_MTAB_23069 | 3017029024 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip | tamoxifen | ChEMBL | CHEMBL83 | tamoxifen | NA | none | 8 | hour | |
| 003017029025.CEL | TG_rat_vit_Tam_Ctl_8h_2 | Steatotic | Non_steatotic | Non_steatotic_none | none | Non_steatotic_8h | Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | 3017148029 | Rattus norvegicus | 5060022LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | tamoxifen | Control _ tamoxifen | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5019042LRA | 5019042LRA:biotin | biotin | P_MTAB_23069 | 3017029025 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip | tamoxifen | ChEMBL | CHEMBL83 | tamoxifen | NA | none | 8 | hour | |
| 003017030002.CEL | TG_rat_vit_Tam_Ctl_24h_1 | Steatotic | Non_steatotic | Non_steatotic_none | none | Non_steatotic_24h | Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | 3017149006 | Rattus norvegicus | 5060031LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | tamoxifen | Control _ tamoxifen | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5019051LRA | 5019051LRA:biotin | biotin | P_MTAB_23069 | 3017030002 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip | tamoxifen | ChEMBL | CHEMBL83 | tamoxifen | NA | none | 24 | hour | |
| 003017030003.CEL | TG_rat_vit_Tam_Ctl_24h_2 | Steatotic | Non_steatotic | Non_steatotic_none | none | Non_steatotic_24h | Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | 3017149007 | Rattus norvegicus | 5060032LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | tamoxifen | Control _ tamoxifen | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5019052LRA | 5019052LRA:biotin | biotin | P_MTAB_23069 | 3017030003 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip | tamoxifen | ChEMBL | CHEMBL83 | tamoxifen | NA | none | 24 | hour | |
| 003017463014.CEL | TG_rat_vit_Tam_120nm_2h_1 | Steatotic | Steatotic | Steatotic_low | low | Steatotic_2h | Low | Steatotic_2h_Low | Steatotic_2h_Low | Steatotic_2h_Low | 3017148022 | Rattus norvegicus | 5060041LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | tamoxifen | Low _ tamoxifen | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5200031LRA | 5200031LRA:biotin | biotin | P_MTAB_23069 | 3017463014 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip | tamoxifen | ChEMBL | CHEMBL83 | tamoxifen | 1.2e-01 | micromolar | low | 2 | hour | |||
| 003017463015.CEL | TG_rat_vit_Tam_120nm_2h_2 | Steatotic | Steatotic | Steatotic_low | low | Steatotic_2h | Low | Steatotic_2h_Low | Steatotic_2h_Low | Steatotic_2h_Low | 3017148023 | Rattus norvegicus | 5060042LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | tamoxifen | Low _ tamoxifen | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5200032LRA | 5200032LRA:biotin | biotin | P_MTAB_23069 | 3017463015 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip | tamoxifen | ChEMBL | CHEMBL83 | tamoxifen | 1.2e-01 | micromolar | low | 2 | hour | |||
| 003017462030.CEL | TG_rat_vit_Tam_120nm_8h_1 | Steatotic | Steatotic | Steatotic_low | low | Steatotic_8h | Low | Steatotic_8h_Low | Steatotic_8h_Low | Steatotic_8h_Low | 3017148030 | Rattus norvegicus | 5060051LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | tamoxifen | Low _ tamoxifen | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5200041LRA | 5200041LRA:biotin | biotin | P_MTAB_23069 | 3017462030 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip | tamoxifen | ChEMBL | CHEMBL83 | tamoxifen | 1.2e-01 | micromolar | low | 8 | hour | |||
| 003017463001.CEL | TG_rat_vit_Tam_120nm_8h_2 | Steatotic | Steatotic | Steatotic_low | low | Steatotic_8h | Low | Steatotic_8h_Low | Steatotic_8h_Low | Steatotic_8h_Low | 3017149001 | Rattus norvegicus | 5060052LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | tamoxifen | Low _ tamoxifen | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5200042LRA | 5200042LRA:biotin | biotin | P_MTAB_23069 | 3017463001 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip | tamoxifen | ChEMBL | CHEMBL83 | tamoxifen | 1.2e-01 | micromolar | low | 8 | hour | |||
| 003017463008.CEL | TG_rat_vit_Tam_120nm_24h_1 | Steatotic | Steatotic | Steatotic_low | low | Steatotic_24h | Low | Steatotic_24h_Low | Steatotic_24h_Low | Steatotic_24h_Low | 3017149008 | Rattus norvegicus | 5060061LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | tamoxifen | Low _ tamoxifen | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5200051LRA | 5200051LRA:biotin | biotin | P_MTAB_23069 | 3017463008 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip | tamoxifen | ChEMBL | CHEMBL83 | tamoxifen | 1.2e-01 | micromolar | low | 24 | hour | |||
| 003017463009.CEL | TG_rat_vit_Tam_120nm_24h_2 | Steatotic | Steatotic | Steatotic_low | low | Steatotic_24h | Low | Steatotic_24h_Low | Steatotic_24h_Low | Steatotic_24h_Low | 3017149009 | Rattus norvegicus | 5060062LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | tamoxifen | Low _ tamoxifen | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5200052LRA | 5200052LRA:biotin | biotin | P_MTAB_23069 | 3017463009 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip | tamoxifen | ChEMBL | CHEMBL83 | tamoxifen | 1.2e-01 | micromolar | low | 24 | hour | |||
| 003017068004.CEL | TG_rat_vit_Tam_600nm_2h_1 | Steatotic | Steatotic | Steatotic_middle | middle | Steatotic_2h | Middle | Steatotic_2h_Middle | Steatotic_2h_Middle | Steatotic_2h_MiddleHigh | Steatotic_2h_MiddleHigh | 3017148024 | Rattus norvegicus | 5060071LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | tamoxifen | Middle _ tamoxifen | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5033092LRA | 5033092LRA:biotin | biotin | P_MTAB_23069 | 3017068004 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip | tamoxifen | ChEMBL | CHEMBL83 | tamoxifen | 6.0e-01 | micromolar | middle | 2 | hour | ||
| 003017069021.CEL | TG_rat_vit_Tam_600nm_2h_2 | Steatotic | Steatotic | Steatotic_middle | middle | Steatotic_2h | Middle | Steatotic_2h_Middle | Steatotic_2h_Middle | Steatotic_2h_MiddleHigh | Steatotic_2h_MiddleHigh | 3017148025 | Rattus norvegicus | 5060072LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | tamoxifen | Middle _ tamoxifen | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5033091LRA | 5033091LRA:biotin | biotin | P_MTAB_23069 | 3017069021 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip | tamoxifen | ChEMBL | CHEMBL83 | tamoxifen | 6.0e-01 | micromolar | middle | 2 | hour | ||
| 003017069007.CEL | TG_rat_vit_Tam_600nm_8h_1 | Steatotic | Steatotic | Steatotic_middle | middle | Steatotic_8h | Middle | Steatotic_8h_Middle | Steatotic_8h_Middle | Steatotic_8h_MiddleHigh | Steatotic_8h_MiddleHigh | 3017149002 | Rattus norvegicus | 5060081LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | tamoxifen | Middle _ tamoxifen | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5033101LRA | 5033101LRA:biotin | biotin | P_MTAB_23069 | 3017069007 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip | tamoxifen | ChEMBL | CHEMBL83 | tamoxifen | 6.0e-01 | micromolar | middle | 8 | hour | ||
| 003017069008.CEL | TG_rat_vit_Tam_600nm_8h_2 | Steatotic | Steatotic | Steatotic_middle | middle | Steatotic_8h | Middle | Steatotic_8h_Middle | Steatotic_8h_Middle | Steatotic_8h_MiddleHigh | Steatotic_8h_MiddleHigh | 3017149003 | Rattus norvegicus | 5060082LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | tamoxifen | Middle _ tamoxifen | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5033102LRA | 5033102LRA:biotin | biotin | P_MTAB_23069 | 3017069008 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip | tamoxifen | ChEMBL | CHEMBL83 | tamoxifen | 6.0e-01 | micromolar | middle | 8 | hour | ||
| 003017069015.CEL | TG_rat_vit_Tam_600nm_24h_1 | Steatotic | Steatotic | Steatotic_middle | middle | Steatotic_24h | Middle | Steatotic_24h_Middle | Steatotic_24h_Middle | Steatotic_24h_MiddleHigh | Steatotic_24h_MiddleHigh | 3017149010 | Rattus norvegicus | 5060091LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | tamoxifen | Middle _ tamoxifen | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5033111LRA | 5033111LRA:biotin | biotin | P_MTAB_23069 | 3017069015 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip | tamoxifen | ChEMBL | CHEMBL83 | tamoxifen | 6.0e-01 | micromolar | middle | 24 | hour | ||
| 003017069016.CEL | TG_rat_vit_Tam_600nm_24h_2 | Steatotic | Steatotic | Steatotic_middle | middle | Steatotic_24h | Middle | Steatotic_24h_Middle | Steatotic_24h_Middle | Steatotic_24h_MiddleHigh | Steatotic_24h_MiddleHigh | 3017149011 | Rattus norvegicus | 5060092LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | tamoxifen | Middle _ tamoxifen | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5033112LRA | 5033112LRA:biotin | biotin | P_MTAB_23069 | 3017069016 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip | tamoxifen | ChEMBL | CHEMBL83 | tamoxifen | 6.0e-01 | micromolar | middle | 24 | hour | ||
| 003017257012.CEL | TG_rat_vit_Tam_3um_2h_1 | Steatotic | Steatotic | Steatotic_high | high | Steatotic_2h | High | Steatotic_2h_High | Steatotic_2h_High | Steatotic_2h_MiddleHigh | Steatotic_2h_MiddleHigh | 3017148026 | Rattus norvegicus | 5060101LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | tamoxifen | High _ tamoxifen | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5131031LRA | 5131031LRA:biotin | biotin | P_MTAB_23069 | 3017257012 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip | tamoxifen | ChEMBL | CHEMBL83 | tamoxifen | 3.0e+00 | micromolar | high | 2 | hour | ||
| 003017257013.CEL | TG_rat_vit_Tam_3um_2h_2 | Steatotic | Steatotic | Steatotic_high | high | Steatotic_2h | High | Steatotic_2h_High | Steatotic_2h_High | Steatotic_2h_MiddleHigh | Steatotic_2h_MiddleHigh | 3017148027 | Rattus norvegicus | 5060102LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | tamoxifen | High _ tamoxifen | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5131032LRA | 5131032LRA:biotin | biotin | P_MTAB_23069 | 3017257013 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip | tamoxifen | ChEMBL | CHEMBL83 | tamoxifen | 3.0e+00 | micromolar | high | 2 | hour | ||
| 003017256028.CEL | TG_rat_vit_Tam_3um_8h_1 | Steatotic | Steatotic | Steatotic_high | high | Steatotic_8h | High | Steatotic_8h_High | Steatotic_8h_High | Steatotic_8h_MiddleHigh | Steatotic_8h_MiddleHigh | 3017149004 | Rattus norvegicus | 5060111LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | tamoxifen | High _ tamoxifen | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5131041LRA | 5131041LRA:biotin | biotin | P_MTAB_23069 | 3017256028 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip | tamoxifen | ChEMBL | CHEMBL83 | tamoxifen | 3.0e+00 | micromolar | high | 8 | hour | ||
| 003017256029.CEL | TG_rat_vit_Tam_3um_8h_2 | Steatotic | Steatotic | Steatotic_high | high | Steatotic_8h | High | Steatotic_8h_High | Steatotic_8h_High | Steatotic_8h_MiddleHigh | Steatotic_8h_MiddleHigh | 3017149005 | Rattus norvegicus | 5060112LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | tamoxifen | High _ tamoxifen | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5131042LRA | 5131042LRA:biotin | biotin | P_MTAB_23069 | 3017256029 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip | tamoxifen | ChEMBL | CHEMBL83 | tamoxifen | 3.0e+00 | micromolar | high | 8 | hour | ||
| 003017257006.CEL | TG_rat_vit_Tam_3um_24h_1 | Steatotic | Steatotic | Steatotic_high | high | Steatotic_24h | High | Steatotic_24h_High | Steatotic_24h_High | Steatotic_24h_MiddleHigh | Steatotic_24h_MiddleHigh | 3017149012 | Rattus norvegicus | 5060121LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | tamoxifen | High _ tamoxifen | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5131051LRA | 5131051LRA:biotin | biotin | P_MTAB_23069 | 3017257006 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip | tamoxifen | ChEMBL | CHEMBL83 | tamoxifen | 3.0e+00 | micromolar | high | 24 | hour | ||
| 003017257007.CEL | TG_rat_vit_Tam_3um_24h_2 | Steatotic | Steatotic | Steatotic_high | high | Steatotic_24h | High | Steatotic_24h_High | Steatotic_24h_High | Steatotic_24h_MiddleHigh | Steatotic_24h_MiddleHigh | 3017149013 | Rattus norvegicus | 5060122LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | tamoxifen | High _ tamoxifen | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5131052LRA | 5131052LRA:biotin | biotin | P_MTAB_23069 | 3017257007 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip | tamoxifen | ChEMBL | CHEMBL83 | tamoxifen | 3.0e+00 | micromolar | high | 24 | hour | ||
| 003017121024.CEL | TG_rat_vit_Vpa_Ctl_2h_1 | Steatotic | Non_steatotic | Non_steatotic_none | none | Non_steatotic_2h | Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | 3017006001 | Rattus norvegicus | 5008011LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | valproic acid | Control _ valproic acid | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5056061LRA | 5056061LRA:biotin | biotin | P_MTAB_23069 | 3017121024 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip | valproic acid | ChEMBL | CHEMBL109 | valproic acid | NA | none | 2 | hour | |
| 003017121025.CEL | TG_rat_vit_Vpa_Ctl_2h_2 | Steatotic | Non_steatotic | Non_steatotic_none | none | Non_steatotic_2h | Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | Non_steatotic_2h_Control | 3017006002 | Rattus norvegicus | 5008012LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | valproic acid | Control _ valproic acid | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5056062LRA | 5056062LRA:biotin | biotin | P_MTAB_23069 | 3017121025 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip | valproic acid | ChEMBL | CHEMBL109 | valproic acid | NA | none | 2 | hour | |
| 003017121010.CEL | TG_rat_vit_Vpa_Ctl_8h_1 | Steatotic | Non_steatotic | Non_steatotic_none | none | Non_steatotic_8h | Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | 3017006009 | Rattus norvegicus | 5008021LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | valproic acid | Control _ valproic acid | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5056071LRA | 5056071LRA:biotin | biotin | P_MTAB_23069 | 3017121010 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip | valproic acid | ChEMBL | CHEMBL109 | valproic acid | NA | none | 8 | hour | |
| 003017121011.CEL | TG_rat_vit_Vpa_Ctl_8h_2 | Steatotic | Non_steatotic | Non_steatotic_none | none | Non_steatotic_8h | Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | Non_steatotic_8h_Control | 3017006010 | Rattus norvegicus | 5008022LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | valproic acid | Control _ valproic acid | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5056072LRA | 5056072LRA:biotin | biotin | P_MTAB_23069 | 3017121011 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip | valproic acid | ChEMBL | CHEMBL109 | valproic acid | NA | none | 8 | hour | |
| 003017121018.CEL | TG_rat_vit_Vpa_Ctl_24h_1 | Steatotic | Non_steatotic | Non_steatotic_none | none | Non_steatotic_24h | Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | 3017006017 | Rattus norvegicus | 5008031LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | valproic acid | Control _ valproic acid | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5056081LRA | 5056081LRA:biotin | biotin | P_MTAB_23069 | 3017121018 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip | valproic acid | ChEMBL | CHEMBL109 | valproic acid | NA | none | 24 | hour | |
| 003017121019.CEL | TG_rat_vit_Vpa_Ctl_24h_2 | Steatotic | Non_steatotic | Non_steatotic_none | none | Non_steatotic_24h | Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | Non_steatotic_24h_Control | 3017006018 | Rattus norvegicus | 5008032LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | valproic acid | Control _ valproic acid | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5056082LRA | 5056082LRA:biotin | biotin | P_MTAB_23069 | 3017121019 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip | valproic acid | ChEMBL | CHEMBL109 | valproic acid | NA | none | 24 | hour | |
| 003017118030.CEL | TG_rat_vit_Vpa_400um_2h_1 | Steatotic | Steatotic | Steatotic_low | low | Steatotic_2h | Low | Steatotic_2h_Low | Steatotic_2h_Low | Steatotic_2h_Low | 3017006003 | Rattus norvegicus | 5008041LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | valproic acid | Low _ valproic acid | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5040061LRA | 5040061LRA:biotin | biotin | P_MTAB_23069 | 3017118030 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip | valproic acid | ChEMBL | CHEMBL109 | valproic acid | 4.0e+02 | micromolar | low | 2 | hour | |||
| 003017119001.CEL | TG_rat_vit_Vpa_400um_2h_2 | Steatotic | Steatotic | Steatotic_low | low | Steatotic_2h | Low | Steatotic_2h_Low | Steatotic_2h_Low | Steatotic_2h_Low | 3017006004 | Rattus norvegicus | 5008042LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | valproic acid | Low _ valproic acid | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5040062LRA | 5040062LRA:biotin | biotin | P_MTAB_23069 | 3017119001 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip | valproic acid | ChEMBL | CHEMBL109 | valproic acid | 4.0e+02 | micromolar | low | 2 | hour | |||
| 003017118016.CEL | TG_rat_vit_Vpa_400um_8h_1 | Steatotic | Steatotic | Steatotic_low | low | Steatotic_8h | Low | Steatotic_8h_Low | Steatotic_8h_Low | Steatotic_8h_Low | 3017006011 | Rattus norvegicus | 5008051LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | valproic acid | Low _ valproic acid | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5040071LRA | 5040071LRA:biotin | biotin | P_MTAB_23069 | 3017118016 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip | valproic acid | ChEMBL | CHEMBL109 | valproic acid | 4.0e+02 | micromolar | low | 8 | hour | |||
| 003017118017.CEL | TG_rat_vit_Vpa_400um_8h_2 | Steatotic | Steatotic | Steatotic_low | low | Steatotic_8h | Low | Steatotic_8h_Low | Steatotic_8h_Low | Steatotic_8h_Low | 3017006012 | Rattus norvegicus | 5008052LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | valproic acid | Low _ valproic acid | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5040072LRA | 5040072LRA:biotin | biotin | P_MTAB_23069 | 3017118017 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip | valproic acid | ChEMBL | CHEMBL109 | valproic acid | 4.0e+02 | micromolar | low | 8 | hour | |||
| 003017118025.CEL | TG_rat_vit_Vpa_400um_24h_1 | Steatotic | Steatotic | Steatotic_low | low | Steatotic_24h | Low | Steatotic_24h_Low | Steatotic_24h_Low | Steatotic_24h_Low | 3017006019 | Rattus norvegicus | 5008061LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | valproic acid | Low _ valproic acid | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5040082LRA | 5040082LRA:biotin | biotin | P_MTAB_23069 | 3017118025 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip | valproic acid | ChEMBL | CHEMBL109 | valproic acid | 4.0e+02 | micromolar | low | 24 | hour | |||
| 003017118024.CEL | TG_rat_vit_Vpa_400um_24h_2 | Steatotic | Steatotic | Steatotic_low | low | Steatotic_24h | Low | Steatotic_24h_Low | Steatotic_24h_Low | Steatotic_24h_Low | 3017005026 | Rattus norvegicus | 5008062LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | valproic acid | Low _ valproic acid | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5040081LRA | 5040081LRA:biotin | biotin | P_MTAB_23069 | 3017118024 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip | valproic acid | ChEMBL | CHEMBL109 | valproic acid | 4.0e+02 | micromolar | low | 24 | hour | |||
| 003017373027.CEL | TG_rat_vit_Vpa_2000um_2h_1 | Steatotic | Steatotic | Steatotic_middle | middle | Steatotic_2h | Middle | Steatotic_2h_Middle | Steatotic_2h_Middle | Steatotic_2h_MiddleHigh | Steatotic_2h_MiddleHigh | 3017006005 | Rattus norvegicus | 5008071LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | valproic acid | Middle _ valproic acid | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5194031LRA | 5194031LRA:biotin | biotin | P_MTAB_23069 | 3017373027 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip | valproic acid | ChEMBL | CHEMBL109 | valproic acid | 2.0e+03 | micromolar | middle | 2 | hour | ||
| 003017373028.CEL | TG_rat_vit_Vpa_2000um_2h_2 | Steatotic | Steatotic | Steatotic_middle | middle | Steatotic_2h | Middle | Steatotic_2h_Middle | Steatotic_2h_Middle | Steatotic_2h_MiddleHigh | Steatotic_2h_MiddleHigh | 3017006006 | Rattus norvegicus | 5008072LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | valproic acid | Middle _ valproic acid | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5194032LRA | 5194032LRA:biotin | biotin | P_MTAB_23069 | 3017373028 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip | valproic acid | ChEMBL | CHEMBL109 | valproic acid | 2.0e+03 | micromolar | middle | 2 | hour | ||
| 003017373013.CEL | TG_rat_vit_Vpa_2000um_8h_1 | Steatotic | Steatotic | Steatotic_middle | middle | Steatotic_8h | Middle | Steatotic_8h_Middle | Steatotic_8h_Middle | Steatotic_8h_MiddleHigh | Steatotic_8h_MiddleHigh | 3017006013 | Rattus norvegicus | 5008081LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | valproic acid | Middle _ valproic acid | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5194041LRA | 5194041LRA:biotin | biotin | P_MTAB_23069 | 3017373013 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip | valproic acid | ChEMBL | CHEMBL109 | valproic acid | 2.0e+03 | micromolar | middle | 8 | hour | ||
| 003017373014.CEL | TG_rat_vit_Vpa_2000um_8h_2 | Steatotic | Steatotic | Steatotic_middle | middle | Steatotic_8h | Middle | Steatotic_8h_Middle | Steatotic_8h_Middle | Steatotic_8h_MiddleHigh | Steatotic_8h_MiddleHigh | 3017006014 | Rattus norvegicus | 5008082LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | valproic acid | Middle _ valproic acid | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5194042LRA | 5194042LRA:biotin | biotin | P_MTAB_23069 | 3017373014 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip | valproic acid | ChEMBL | CHEMBL109 | valproic acid | 2.0e+03 | micromolar | middle | 8 | hour | ||
| 003017373021.CEL | TG_rat_vit_Vpa_2000um_24h_1 | Steatotic | Steatotic | Steatotic_middle | middle | Steatotic_24h | Middle | Steatotic_24h_Middle | Steatotic_24h_Middle | Steatotic_24h_MiddleHigh | Steatotic_24h_MiddleHigh | 3017005027 | Rattus norvegicus | 5008091LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | valproic acid | Middle _ valproic acid | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5194051LRA | 5194051LRA:biotin | biotin | P_MTAB_23069 | 3017373021 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip | valproic acid | ChEMBL | CHEMBL109 | valproic acid | 2.0e+03 | micromolar | middle | 24 | hour | ||
| 003017373022.CEL | TG_rat_vit_Vpa_2000um_24h_2 | Steatotic | Steatotic | Steatotic_middle | middle | Steatotic_24h | Middle | Steatotic_24h_Middle | Steatotic_24h_Middle | Steatotic_24h_MiddleHigh | Steatotic_24h_MiddleHigh | 3017005028 | Rattus norvegicus | 5008092LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | valproic acid | Middle _ valproic acid | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5194052LRA | 5194052LRA:biotin | biotin | P_MTAB_23069 | 3017373022 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip | valproic acid | ChEMBL | CHEMBL109 | valproic acid | 2.0e+03 | micromolar | middle | 24 | hour | ||
| 003017169013.CEL | TG_rat_vit_Vpa_10000um_2h_1 | Steatotic | Steatotic | Steatotic_high | high | Steatotic_2h | High | Steatotic_2h_High | Steatotic_2h_High | Steatotic_2h_MiddleHigh | Steatotic_2h_MiddleHigh | 3017006007 | Rattus norvegicus | 5008101LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | valproic acid | High _ valproic acid | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5065101LRA | 5065101LRA:biotin | biotin | P_MTAB_23069 | 3017169013 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip | valproic acid | ChEMBL | CHEMBL109 | valproic acid | 1.0e+04 | micromolar | high | 2 | hour | ||
| 003017169014.CEL | TG_rat_vit_Vpa_10000um_2h_2 | Steatotic | Steatotic | Steatotic_high | high | Steatotic_2h | High | Steatotic_2h_High | Steatotic_2h_High | Steatotic_2h_MiddleHigh | Steatotic_2h_MiddleHigh | 3017006008 | Rattus norvegicus | 5008102LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | valproic acid | High _ valproic acid | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5065102LRA | 5065102LRA:biotin | biotin | P_MTAB_23069 | 3017169014 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip | valproic acid | ChEMBL | CHEMBL109 | valproic acid | 1.0e+04 | micromolar | high | 2 | hour | ||
| 003017169021.CEL | TG_rat_vit_Vpa_10000um_8h_1 | Steatotic | Steatotic | Steatotic_high | high | Steatotic_8h | High | Steatotic_8h_High | Steatotic_8h_High | Steatotic_8h_MiddleHigh | Steatotic_8h_MiddleHigh | 3017006015 | Rattus norvegicus | 5008111LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | valproic acid | High _ valproic acid | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5065111LRA | 5065111LRA:biotin | biotin | P_MTAB_23069 | 3017169021 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip | valproic acid | ChEMBL | CHEMBL109 | valproic acid | 1.0e+04 | micromolar | high | 8 | hour | ||
| 003017169022.CEL | TG_rat_vit_Vpa_10000um_8h_2 | Steatotic | Steatotic | Steatotic_high | high | Steatotic_8h | High | Steatotic_8h_High | Steatotic_8h_High | Steatotic_8h_MiddleHigh | Steatotic_8h_MiddleHigh | 3017006016 | Rattus norvegicus | 5008112LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | valproic acid | High _ valproic acid | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5065112LRA | 5065112LRA:biotin | biotin | P_MTAB_23069 | 3017169022 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip | valproic acid | ChEMBL | CHEMBL109 | valproic acid | 1.0e+04 | micromolar | high | 8 | hour | ||
| 003017169029.CEL | TG_rat_vit_Vpa_10000um_24h_1 | Steatotic | Steatotic | Steatotic_high | high | Steatotic_24h | High | Steatotic_24h_High | Steatotic_24h_High | Steatotic_24h_MiddleHigh | Steatotic_24h_MiddleHigh | 3017005029 | Rattus norvegicus | 5008121LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | valproic acid | High _ valproic acid | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5065121LRA | 5065121LRA:biotin | biotin | P_MTAB_23069 | 3017169029 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip | valproic acid | ChEMBL | CHEMBL109 | valproic acid | 1.0e+04 | micromolar | high | 24 | hour | ||
| 003017169030.CEL | TG_rat_vit_Vpa_10000um_24h_2 | Steatotic | Steatotic | Steatotic_high | high | Steatotic_24h | High | Steatotic_24h_High | Steatotic_24h_High | Steatotic_24h_MiddleHigh | Steatotic_24h_MiddleHigh | 3017005030 | Rattus norvegicus | 5008122LRA | Sprague Dawley | 6 | week | adult | male | liver | hepatocyte | wild type genotype | valproic acid | High _ valproic acid | cell | P_MTAB_23065 | P_MTAB_23066 | P_MTAB_23067 | P_MTAB_23068 | 5065122LRA | 5065122LRA:biotin | biotin | P_MTAB_23069 | 3017169030 | array assay | A_AFFY_43 | ArrayExpress | P_MTAB_23070 | ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip | valproic acid | ChEMBL | CHEMBL109 | valproic acid | 1.0e+04 | micromolar | high | 24 | hour |
# Set input parameters
cutOffAdj.P.Val <- 0.05
cutOfflogFC <- 0
cutOffAveExpr <- 6
cutOffPval <- 0.05 #used if Adj.P.Val removes all
# Groups to compare
Description_column<-"Group"
InterestGroup<- "Steatotic"
Controls<-"Non_steatotic"Subset input tables. Only include data relevant to current analysis
# remove unused metadata
descriptionTable2<-descriptionTable[,c("Array", "Name", Description_column)]
write.table(descriptionTable2, paste0(descriptionFile, "_sub.txt"), row.names=FALSE, quote=FALSE, sep="\t")
# remove unused samples
descriptionTable2<- descriptionTable2[c(grep(InterestGroup,descriptionTable2[,Description_column]), grep(Controls,descriptionTable2[,Description_column])),]
colnames(descriptionTable2)<-c("Array", "Name", "experimentFactor")
normDataTable<-normDataTable[,c(descriptionTable2$Name)]| Var1 | Freq |
|---|---|
| Non_steatotic | 72 |
| Steatotic | 68 |
PCA plot to exclude the post-processing outliers replicates
Creating UMAP plots
Data structuring & cleaning
Statistical analysis with limma
## --[[ Saving table for contrast Steatoticx1+Non_steatoticx-1 ]]--Displaying top 6 genes, to check data & pipeline correctness
Plotting histograms
## [1] "p-value histograms"
## --[[ Saving Steatoticx1+Non_steatoticx-1.txt P.Value_hist.png ]]--
## [1] "adapted fold change histograms"
## --[[ Saving Steatoticx1+Non_steatoticx-1.txt FC_hist.png ]]--
Creating table based on the cut-offs
## [1] "Creating table based on the cut-offs"
## [1] "Applying cutOffAveExpr (6) removed 3115 genes. 9038 genes remain."
## [1] "Additionally, applying cutOfflogFC (0) removed 0 genes. 9038 genes remain."
## [1] "Additionally, applying cutOffAdj.P.Val (0.05) removed 8898 genes. 140 genes remain."
## --[[ Saving table Steatoticx1+Non_steatoticx-1_chosen_cutOff.txt ]]--Creating UMAP based on DEGs
Creating UMAP plots
List of differentially expressed genes (DEGs)
## R version 4.3.1 (2023-06-16 ucrt)
## Platform: x86_64-w64-mingw32/x64 (64-bit)
## Running under: Windows 10 x64 (build 19045)
##
## Matrix products: default
##
##
## locale:
## [1] LC_COLLATE=Dutch_Netherlands.utf8 LC_CTYPE=Dutch_Netherlands.utf8
## [3] LC_MONETARY=Dutch_Netherlands.utf8 LC_NUMERIC=C
## [5] LC_TIME=Dutch_Netherlands.utf8
##
## time zone: Europe/Amsterdam
## tzcode source: internal
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] gdata_3.0.0 limma_3.56.2 umap_0.2.10.0 plotly_4.10.3 ggplot2_3.4.4
## [6] DT_0.30 knitr_1.45
##
## loaded via a namespace (and not attached):
## [1] sass_0.4.7 utf8_1.2.4 generics_0.1.3 tidyr_1.3.0
## [5] gtools_3.9.4 lattice_0.21-8 digest_0.6.33 magrittr_2.0.3
## [9] evaluate_0.23 grid_4.3.1 fastmap_1.1.1 jsonlite_1.8.7
## [13] Matrix_1.5-4.1 RSpectra_0.16-1 httr_1.4.7 purrr_1.0.2
## [17] fansi_1.0.5 crosstalk_1.2.0 viridisLite_0.4.2 scales_1.2.1
## [21] lazyeval_0.2.2 jquerylib_0.1.4 cli_3.6.1 rlang_1.1.1
## [25] ellipsis_0.3.2 munsell_0.5.0 yaml_2.3.7 withr_2.5.2
## [29] cachem_1.0.8 tools_4.3.1 dplyr_1.1.3 colorspace_2.1-0
## [33] reticulate_1.34.0 vctrs_0.6.4 R6_2.5.1 png_0.1-8
## [37] lifecycle_1.0.4 htmlwidgets_1.6.2 pkgconfig_2.0.3 pillar_1.9.0
## [41] bslib_0.5.1 gtable_0.3.4 data.table_1.14.8 glue_1.6.2
## [45] Rcpp_1.0.11 xfun_0.39 tibble_3.2.1 tidyselect_1.2.0
## [49] highr_0.10 farver_2.1.1 htmltools_0.5.5 rmarkdown_2.25
## [53] compiler_4.3.1 askpass_1.2.0 openssl_2.1.1End of Report