Title: “Differential Expression Identification”
Purpose: “ASPIS omics Steatosis case study”
Input.data: “NormData_TG_Gates_Rat_invitro_ENS.txt”
Author: “Marcha Verheijen (ONTOX)”
Date: ‘2024-01-11’

Applied tools:

The R-ODAF pipeline (Omics Data Analysis Framework for Regulatory Application)

for Microarray technology was used. (Publication: “R-ODAF: Omics data analysis framework for regulatory application”, 2022, Regulatory Toxicology and Pharmacology.) This pipeline can be found at https://github.com/R-ODAF/Main and was based on:

ArrayAnalysis - affyAnalysisStat

a tool for statistical analysis of Affymetrix expression data. Copyright 2010-2014 BiGCaT Bioinformatics

Overview of samples and groups

Overview of array names and array groups
Array Name CompoundClass Group Group_Dose SteatosisPotential Group_Time Dose TimeDose TimeDose_low TimeDose_middle TimeDose_high TimeDose2 TimeDose_middlehigh Source.Name Characteristics.organism. Characteristics.individual. Characteristics.strain. Characteristics.age. Unit.time.unit. Characteristics.developmental.stage. Characteristics.sex. Characteristics.organism.part. Characteristics.cell.type. Characteristics.genotype. Characteristics.cohort. Description Material.Type Protocol.REF Protocol.REF.1 Protocol.REF.2 Protocol.REF.3 Extract.Name Labeled.Extract.Name Label Protocol.REF.4 Assay.Name Technology.Type Array.Design.REF Term.Source.REF Protocol.REF.5 Comment..ArrayExpress.FTP.file. Factor.Value.cohort. Term.Source.REF.1 Term.Accession.Number Factor.Value.compound. Factor.Value.dose. Unit.dose.unit. Dose.1 Factor.Value.time. Unit.time.unit..1
003017362007.CEL TG_rat_vit_Ami_ctl_2h_1 Steatotic Non_steatotic Non_steatotic_none none Non_steatotic_2h Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control 3017077026 Rattus norvegicus 5039011LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype amiodarone Control _ amiodarone cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5193041LRA 5193041LRA:biotin biotin P_MTAB_23069 3017362007 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip amiodarone ChEMBL CHEMBL633 amiodarone NA none 2 hour
003017362008.CEL TG_rat_vit_Ami_ctl_2h_2 Steatotic Non_steatotic Non_steatotic_none none Non_steatotic_2h Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control 3017077027 Rattus norvegicus 5039012LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype amiodarone Control _ amiodarone cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5193042LRA 5193042LRA:biotin biotin P_MTAB_23069 3017362008 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip amiodarone ChEMBL CHEMBL633 amiodarone NA none 2 hour
003017362015.CEL TG_rat_vit_Ami_ctl_8h_1 Steatotic Non_steatotic Non_steatotic_none none Non_steatotic_8h Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control 3017078004 Rattus norvegicus 5039021LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype amiodarone Control _ amiodarone cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5193051LRA 5193051LRA:biotin biotin P_MTAB_23069 3017362015 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip amiodarone ChEMBL CHEMBL633 amiodarone NA none 8 hour
003017362016.CEL TG_rat_vit_Ami_ctl_8h_2 Steatotic Non_steatotic Non_steatotic_none none Non_steatotic_8h Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control 3017078005 Rattus norvegicus 5039022LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype amiodarone Control _ amiodarone cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5193052LRA 5193052LRA:biotin biotin P_MTAB_23069 3017362016 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip amiodarone ChEMBL CHEMBL633 amiodarone NA none 8 hour
003017362023.CEL TG_rat_vit_Ami_ctl_24h_1 Steatotic Non_steatotic Non_steatotic_none none Non_steatotic_24h Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control 3017078012 Rattus norvegicus 5039031LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype amiodarone Control _ amiodarone cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5193061LRA 5193061LRA:biotin biotin P_MTAB_23069 3017362023 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip amiodarone ChEMBL CHEMBL633 amiodarone NA none 24 hour
003017362024.CEL TG_rat_vit_Ami_ctl_24h_2 Steatotic Non_steatotic Non_steatotic_none none Non_steatotic_24h Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control 3017078013 Rattus norvegicus 5039032LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype amiodarone Control _ amiodarone cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5193062LRA 5193062LRA:biotin biotin P_MTAB_23069 3017362024 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip amiodarone ChEMBL CHEMBL633 amiodarone NA none 24 hour
003017594025.CEL TG_rat_vit_Ami_280nm_2h_1 Steatotic Steatotic Steatotic_low low Steatotic_2h Low Steatotic_2h_Low Steatotic_2h_Low Steatotic_2h_Low 3017077028 Rattus norvegicus 5039041LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype amiodarone Low _ amiodarone cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5200121LRA 5200121LRA:biotin biotin P_MTAB_23069 3017594025 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip amiodarone ChEMBL CHEMBL633 amiodarone 2.8e-01 micromolar low 2 hour
003017594026.CEL TG_rat_vit_Ami_280nm_2h_2 Steatotic Steatotic Steatotic_low low Steatotic_2h Low Steatotic_2h_Low Steatotic_2h_Low Steatotic_2h_Low 3017077029 Rattus norvegicus 5039042LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype amiodarone Low _ amiodarone cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5200122LRA 5200122LRA:biotin biotin P_MTAB_23069 3017594026 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip amiodarone ChEMBL CHEMBL633 amiodarone 2.8e-01 micromolar low 2 hour
003017007014.CEL TG_rat_vit_Ami_280nm_8h_1 Steatotic Steatotic Steatotic_low low Steatotic_8h Low Steatotic_8h_Low Steatotic_8h_Low Steatotic_8h_Low 3017078006 Rattus norvegicus 5039051LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype amiodarone Low _ amiodarone cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5009011LRA 5009011LRA:biotin biotin P_MTAB_23069 3017007014 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip amiodarone ChEMBL CHEMBL633 amiodarone 2.8e-01 micromolar low 8 hour
003017007015.CEL TG_rat_vit_Ami_280nm_8h_2 Steatotic Steatotic Steatotic_low low Steatotic_8h Low Steatotic_8h_Low Steatotic_8h_Low Steatotic_8h_Low 3017078007 Rattus norvegicus 5039052LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype amiodarone Low _ amiodarone cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5009012LRA 5009012LRA:biotin biotin P_MTAB_23069 3017007015 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip amiodarone ChEMBL CHEMBL633 amiodarone 2.8e-01 micromolar low 8 hour
003017007022.CEL TG_rat_vit_Ami_280nm_24h_1 Steatotic Steatotic Steatotic_low low Steatotic_24h Low Steatotic_24h_Low Steatotic_24h_Low Steatotic_24h_Low 3017078014 Rattus norvegicus 5039061LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype amiodarone Low _ amiodarone cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5009021LRA 5009021LRA:biotin biotin P_MTAB_23069 3017007022 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip amiodarone ChEMBL CHEMBL633 amiodarone 2.8e-01 micromolar low 24 hour
003017007023.CEL TG_rat_vit_Ami_280nm_24h_2 Steatotic Steatotic Steatotic_low low Steatotic_24h Low Steatotic_24h_Low Steatotic_24h_Low Steatotic_24h_Low 3017078015 Rattus norvegicus 5039062LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype amiodarone Low _ amiodarone cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5009022LRA 5009022LRA:biotin biotin P_MTAB_23069 3017007023 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip amiodarone ChEMBL CHEMBL633 amiodarone 2.8e-01 micromolar low 24 hour
003017346023.CEL TG_rat_vit_Ami_1400nm_2h_1 Steatotic Steatotic Steatotic_middle middle Steatotic_2h Middle Steatotic_2h_Middle Steatotic_2h_Middle Steatotic_2h_MiddleHigh Steatotic_2h_MiddleHigh 3017077030 Rattus norvegicus 5039071LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype amiodarone Middle _ amiodarone cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5174061LRA 5174061LRA:biotin biotin P_MTAB_23069 3017346023 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip amiodarone ChEMBL CHEMBL633 amiodarone 1.4e+00 micromolar middle 2 hour
003017346024.CEL TG_rat_vit_Ami_1400nm_2h_2 Steatotic Steatotic Steatotic_middle middle Steatotic_2h Middle Steatotic_2h_Middle Steatotic_2h_Middle Steatotic_2h_MiddleHigh Steatotic_2h_MiddleHigh 3017078001 Rattus norvegicus 5039072LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype amiodarone Middle _ amiodarone cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5174062LRA 5174062LRA:biotin biotin P_MTAB_23069 3017346024 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip amiodarone ChEMBL CHEMBL633 amiodarone 1.4e+00 micromolar middle 2 hour
003017346009.CEL TG_rat_vit_Ami_1400nm_8h_1 Steatotic Steatotic Steatotic_middle middle Steatotic_8h Middle Steatotic_8h_Middle Steatotic_8h_Middle Steatotic_8h_MiddleHigh Steatotic_8h_MiddleHigh 3017078008 Rattus norvegicus 5039081LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype amiodarone Middle _ amiodarone cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5174071LRA 5174071LRA:biotin biotin P_MTAB_23069 3017346009 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip amiodarone ChEMBL CHEMBL633 amiodarone 1.4e+00 micromolar middle 8 hour
003017346010.CEL TG_rat_vit_Ami_1400nm_8h_2 Steatotic Steatotic Steatotic_middle middle Steatotic_8h Middle Steatotic_8h_Middle Steatotic_8h_Middle Steatotic_8h_MiddleHigh Steatotic_8h_MiddleHigh 3017078009 Rattus norvegicus 5039082LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype amiodarone Middle _ amiodarone cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5174072LRA 5174072LRA:biotin biotin P_MTAB_23069 3017346010 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip amiodarone ChEMBL CHEMBL633 amiodarone 1.4e+00 micromolar middle 8 hour
003017346017.CEL TG_rat_vit_Ami_1400nm_24h_1 Steatotic Steatotic Steatotic_middle middle Steatotic_24h Middle Steatotic_24h_Middle Steatotic_24h_Middle Steatotic_24h_MiddleHigh Steatotic_24h_MiddleHigh 3017078016 Rattus norvegicus 5039091LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype amiodarone Middle _ amiodarone cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5174081LRA 5174081LRA:biotin biotin P_MTAB_23069 3017346017 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip amiodarone ChEMBL CHEMBL633 amiodarone 1.4e+00 micromolar middle 24 hour
003017346018.CEL TG_rat_vit_Ami_1400nm_24h_2 Steatotic Steatotic Steatotic_middle middle Steatotic_24h Middle Steatotic_24h_Middle Steatotic_24h_Middle Steatotic_24h_MiddleHigh Steatotic_24h_MiddleHigh 3017078017 Rattus norvegicus 5039092LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype amiodarone Middle _ amiodarone cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5174082LRA 5174082LRA:biotin biotin P_MTAB_23069 3017346018 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip amiodarone ChEMBL CHEMBL633 amiodarone 1.4e+00 micromolar middle 24 hour
003017251002.CEL TG_rat_vit_Ami_7um_2h_1 Steatotic Steatotic Steatotic_high high Steatotic_2h High Steatotic_2h_High Steatotic_2h_High Steatotic_2h_MiddleHigh Steatotic_2h_MiddleHigh 3017078002 Rattus norvegicus 5039101LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype amiodarone High _ amiodarone cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5127061LRA 5127061LRA:biotin biotin P_MTAB_23069 3017251002 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip amiodarone ChEMBL CHEMBL633 amiodarone 7.0e+00 micromolar high 2 hour
003017251003.CEL TG_rat_vit_Ami_7um_2h_2 Steatotic Steatotic Steatotic_high high Steatotic_2h High Steatotic_2h_High Steatotic_2h_High Steatotic_2h_MiddleHigh Steatotic_2h_MiddleHigh 3017078003 Rattus norvegicus 5039102LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype amiodarone High _ amiodarone cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5127062LRA 5127062LRA:biotin biotin P_MTAB_23069 3017251003 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip amiodarone ChEMBL CHEMBL633 amiodarone 7.0e+00 micromolar high 2 hour
003017250018.CEL TG_rat_vit_Ami_7um_8h_1 Steatotic Steatotic Steatotic_high high Steatotic_8h High Steatotic_8h_High Steatotic_8h_High Steatotic_8h_MiddleHigh Steatotic_8h_MiddleHigh 3017078010 Rattus norvegicus 5039111LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype amiodarone High _ amiodarone cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5127071LRA 5127071LRA:biotin biotin P_MTAB_23069 3017250018 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip amiodarone ChEMBL CHEMBL633 amiodarone 7.0e+00 micromolar high 8 hour
003017250019.CEL TG_rat_vit_Ami_7um_8h_2 Steatotic Steatotic Steatotic_high high Steatotic_8h High Steatotic_8h_High Steatotic_8h_High Steatotic_8h_MiddleHigh Steatotic_8h_MiddleHigh 3017078011 Rattus norvegicus 5039112LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype amiodarone High _ amiodarone cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5127072LRA 5127072LRA:biotin biotin P_MTAB_23069 3017250019 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip amiodarone ChEMBL CHEMBL633 amiodarone 7.0e+00 micromolar high 8 hour
003017250026.CEL TG_rat_vit_Ami_7um_24h_1 Steatotic Steatotic Steatotic_high high Steatotic_24h High Steatotic_24h_High Steatotic_24h_High Steatotic_24h_MiddleHigh Steatotic_24h_MiddleHigh 3017078018 Rattus norvegicus 5039121LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype amiodarone High _ amiodarone cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5127081LRA 5127081LRA:biotin biotin P_MTAB_23069 3017250026 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip amiodarone ChEMBL CHEMBL633 amiodarone 7.0e+00 micromolar high 24 hour
003017250027.CEL TG_rat_vit_Ami_7um_24h_2 Steatotic Steatotic Steatotic_high high Steatotic_24h High Steatotic_24h_High Steatotic_24h_High Steatotic_24h_MiddleHigh Steatotic_24h_MiddleHigh 3017078019 Rattus norvegicus 5039122LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype amiodarone High _ amiodarone cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5127082LRA 5127082LRA:biotin biotin P_MTAB_23069 3017250027 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.3.zip amiodarone ChEMBL CHEMBL633 amiodarone 7.0e+00 micromolar high 24 hour
003017115005.CEL TG_rat_vit_Ctc_ctl_2h_1 Steatotic Non_steatotic Non_steatotic_none none Non_steatotic_2h Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control 3017722023 Rattus norvegicus 5005011LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype carbon tetrachloride Control _ carbon tetrachloride cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5045071LRA 5045071LRA:biotin biotin P_MTAB_23069 3017115005 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.7.zip carbon tetrachloride ChEMBL CHEMBL44814 carbon tetrachloride NA none 2 hour
003017115006.CEL TG_rat_vit_Ctc_ctl_2h_2 Steatotic Non_steatotic Non_steatotic_none none Non_steatotic_2h Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control 3017722024 Rattus norvegicus 5005012LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype carbon tetrachloride Control _ carbon tetrachloride cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5045072LRA 5045072LRA:biotin biotin P_MTAB_23069 3017115006 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.7.zip carbon tetrachloride ChEMBL CHEMBL44814 carbon tetrachloride NA none 2 hour
003017115013.CEL TG_rat_vit_Ctc_ctl_8h_1 Steatotic Non_steatotic Non_steatotic_none none Non_steatotic_8h Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control 3017722029 Rattus norvegicus 5005031LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype carbon tetrachloride Control _ carbon tetrachloride cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5045081LRA 5045081LRA:biotin biotin P_MTAB_23069 3017115013 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.7.zip carbon tetrachloride ChEMBL CHEMBL44814 carbon tetrachloride NA none 8 hour
003017115014.CEL TG_rat_vit_Ctc_ctl_8h_2 Steatotic Non_steatotic Non_steatotic_none none Non_steatotic_8h Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control 3017722030 Rattus norvegicus 5005032LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype carbon tetrachloride Control _ carbon tetrachloride cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5045082LRA 5045082LRA:biotin biotin P_MTAB_23069 3017115014 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.7.zip carbon tetrachloride ChEMBL CHEMBL44814 carbon tetrachloride NA none 8 hour
003017115021.CEL TG_rat_vit_Ctc_ctl_24h_1 Steatotic Non_steatotic Non_steatotic_none none Non_steatotic_24h Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control 3017723007 Rattus norvegicus 5005041LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype carbon tetrachloride Control _ carbon tetrachloride cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5045091LRA 5045091LRA:biotin biotin P_MTAB_23069 3017115021 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.7.zip carbon tetrachloride ChEMBL CHEMBL44814 carbon tetrachloride NA none 24 hour
003017115022.CEL TG_rat_vit_Ctc_ctl_24h_2 Steatotic Non_steatotic Non_steatotic_none none Non_steatotic_24h Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control 3017723008 Rattus norvegicus 5005042LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype carbon tetrachloride Control _ carbon tetrachloride cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5045092LRA 5045092LRA:biotin biotin P_MTAB_23069 3017115022 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.7.zip carbon tetrachloride ChEMBL CHEMBL44814 carbon tetrachloride NA none 24 hour
003017289026.CEL TG_rat_vit_Ctc_1000um_2h_1 Steatotic Steatotic Steatotic_low low Steatotic_2h Low Steatotic_2h_Low Steatotic_2h_Low Steatotic_2h_Low 3017722025 Rattus norvegicus 5005161LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype carbon tetrachloride Low _ carbon tetrachloride cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5138031LRA 5138031LRA:biotin biotin P_MTAB_23069 3017289026 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.7.zip carbon tetrachloride ChEMBL CHEMBL44814 carbon tetrachloride 1.0e+03 micromolar low 2 hour
003017289027.CEL TG_rat_vit_Ctc_1000um_2h_2 Steatotic Steatotic Steatotic_low low Steatotic_2h Low Steatotic_2h_Low Steatotic_2h_Low Steatotic_2h_Low 3017722026 Rattus norvegicus 5005162LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype carbon tetrachloride Low _ carbon tetrachloride cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5138032LRA 5138032LRA:biotin biotin P_MTAB_23069 3017289027 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.7.zip carbon tetrachloride ChEMBL CHEMBL44814 carbon tetrachloride 1.0e+03 micromolar low 2 hour
003017289012.CEL TG_rat_vit_Ctc_1000um_8h_1 Steatotic Steatotic Steatotic_low low Steatotic_8h Low Steatotic_8h_Low Steatotic_8h_Low Steatotic_8h_Low 3017723001 Rattus norvegicus 5005181LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype carbon tetrachloride Low _ carbon tetrachloride cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5138041LRA 5138041LRA:biotin biotin P_MTAB_23069 3017289012 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.7.zip carbon tetrachloride ChEMBL CHEMBL44814 carbon tetrachloride 1.0e+03 micromolar low 8 hour
003017289013.CEL TG_rat_vit_Ctc_1000um_8h_2 Steatotic Steatotic Steatotic_low low Steatotic_8h Low Steatotic_8h_Low Steatotic_8h_Low Steatotic_8h_Low 3017723002 Rattus norvegicus 5005182LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype carbon tetrachloride Low _ carbon tetrachloride cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5138042LRA 5138042LRA:biotin biotin P_MTAB_23069 3017289013 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.7.zip carbon tetrachloride ChEMBL CHEMBL44814 carbon tetrachloride 1.0e+03 micromolar low 8 hour
003017289020.CEL TG_rat_vit_Ctc_1000um_24h_1 Steatotic Steatotic Steatotic_low low Steatotic_24h Low Steatotic_24h_Low Steatotic_24h_Low Steatotic_24h_Low 3017723009 Rattus norvegicus 5005191LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype carbon tetrachloride Low _ carbon tetrachloride cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5138051LRA 5138051LRA:biotin biotin P_MTAB_23069 3017289020 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.7.zip carbon tetrachloride ChEMBL CHEMBL44814 carbon tetrachloride 1.0e+03 micromolar low 24 hour
003017289021.CEL TG_rat_vit_Ctc_1000um_24h_2 Steatotic Steatotic Steatotic_low low Steatotic_24h Low Steatotic_24h_Low Steatotic_24h_Low Steatotic_24h_Low 3017723010 Rattus norvegicus 5005192LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype carbon tetrachloride Low _ carbon tetrachloride cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5138052LRA 5138052LRA:biotin biotin P_MTAB_23069 3017289021 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.7.zip carbon tetrachloride ChEMBL CHEMBL44814 carbon tetrachloride 1.0e+03 micromolar low 24 hour
003017305022.CEL TG_rat_vit_Ctc_3000um_2h_1 Steatotic Steatotic Steatotic_middle middle Steatotic_2h Middle Steatotic_2h_Middle Steatotic_2h_Middle Steatotic_2h_MiddleHigh Steatotic_2h_MiddleHigh 3017722027 Rattus norvegicus 5005211LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype carbon tetrachloride Middle _ carbon tetrachloride cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5149091LRA 5149091LRA:biotin biotin P_MTAB_23069 3017305022 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.7.zip carbon tetrachloride ChEMBL CHEMBL44814 carbon tetrachloride 3.0e+03 micromolar middle 2 hour
003017305023.CEL TG_rat_vit_Ctc_3000um_2h_2 Steatotic Steatotic Steatotic_middle middle Steatotic_2h Middle Steatotic_2h_Middle Steatotic_2h_Middle Steatotic_2h_MiddleHigh Steatotic_2h_MiddleHigh 3017722028 Rattus norvegicus 5005212LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype carbon tetrachloride Middle _ carbon tetrachloride cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5149092LRA 5149092LRA:biotin biotin P_MTAB_23069 3017305023 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.7.zip carbon tetrachloride ChEMBL CHEMBL44814 carbon tetrachloride 3.0e+03 micromolar middle 2 hour
003017305008.CEL TG_rat_vit_Ctc_3000um_8h_1 Steatotic Steatotic Steatotic_middle middle Steatotic_8h Middle Steatotic_8h_Middle Steatotic_8h_Middle Steatotic_8h_MiddleHigh Steatotic_8h_MiddleHigh 3017723003 Rattus norvegicus 5005231LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype carbon tetrachloride Middle _ carbon tetrachloride cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5149101LRA 5149101LRA:biotin biotin P_MTAB_23069 3017305008 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.7.zip carbon tetrachloride ChEMBL CHEMBL44814 carbon tetrachloride 3.0e+03 micromolar middle 8 hour
003017305009.CEL TG_rat_vit_Ctc_3000um_8h_2 Steatotic Steatotic Steatotic_middle middle Steatotic_8h Middle Steatotic_8h_Middle Steatotic_8h_Middle Steatotic_8h_MiddleHigh Steatotic_8h_MiddleHigh 3017723004 Rattus norvegicus 5005232LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype carbon tetrachloride Middle _ carbon tetrachloride cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5149102LRA 5149102LRA:biotin biotin P_MTAB_23069 3017305009 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.7.zip carbon tetrachloride ChEMBL CHEMBL44814 carbon tetrachloride 3.0e+03 micromolar middle 8 hour
003017305016.CEL TG_rat_vit_Ctc_3000um_24h_1 Steatotic Steatotic Steatotic_middle middle Steatotic_24h Middle Steatotic_24h_Middle Steatotic_24h_Middle Steatotic_24h_MiddleHigh Steatotic_24h_MiddleHigh 3017723011 Rattus norvegicus 5005241LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype carbon tetrachloride Middle _ carbon tetrachloride cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5149111LRA 5149111LRA:biotin biotin P_MTAB_23069 3017305016 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.7.zip carbon tetrachloride ChEMBL CHEMBL44814 carbon tetrachloride 3.0e+03 micromolar middle 24 hour
003017305017.CEL TG_rat_vit_Ctc_3000um_24h_2 Steatotic Steatotic Steatotic_middle middle Steatotic_24h Middle Steatotic_24h_Middle Steatotic_24h_Middle Steatotic_24h_MiddleHigh Steatotic_24h_MiddleHigh 3017723012 Rattus norvegicus 5005242LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype carbon tetrachloride Middle _ carbon tetrachloride cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5149112LRA 5149112LRA:biotin biotin P_MTAB_23069 3017305017 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.7.zip carbon tetrachloride ChEMBL CHEMBL44814 carbon tetrachloride 3.0e+03 micromolar middle 24 hour
003017343019.CEL TG_rat_vit_Ctc_10000um_8h_1 Steatotic Steatotic Steatotic_high high Steatotic_8h High Steatotic_8h_High Steatotic_8h_High Steatotic_8h_MiddleHigh Steatotic_8h_MiddleHigh 3017723005 Rattus norvegicus 5005281LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype carbon tetrachloride High _ carbon tetrachloride cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5175121LRA 5175121LRA:biotin biotin P_MTAB_23069 3017343019 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.7.zip carbon tetrachloride ChEMBL CHEMBL44814 carbon tetrachloride 1.0e+04 micromolar high 8 hour
003017343020.CEL TG_rat_vit_Ctc_10000um_8h_2 Steatotic Steatotic Steatotic_high high Steatotic_8h High Steatotic_8h_High Steatotic_8h_High Steatotic_8h_MiddleHigh Steatotic_8h_MiddleHigh 3017723006 Rattus norvegicus 5005282LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype carbon tetrachloride High _ carbon tetrachloride cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5175122LRA 5175122LRA:biotin biotin P_MTAB_23069 3017343020 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.7.zip carbon tetrachloride ChEMBL CHEMBL44814 carbon tetrachloride 1.0e+04 micromolar high 8 hour
003017077026.CEL TG_rat_vit_Col_ctl_2h_1 Non_Steatotic Non_steatotic Non_steatotic_none none Non_steatotic_2h Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control 3017329003 Rattus norvegicus 5168011LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype colchicine Control _ colchicine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5039011LRA 5039011LRA:biotin biotin P_MTAB_23069 3017077026 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip colchicine ChEMBL CHEMBL107 colchicine NA none 2 hour
003017077027.CEL TG_rat_vit_Col_ctl_2h_2 Non_Steatotic Non_steatotic Non_steatotic_none none Non_steatotic_2h Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control 3017329004 Rattus norvegicus 5168012LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype colchicine Control _ colchicine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5039012LRA 5039012LRA:biotin biotin P_MTAB_23069 3017077027 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip colchicine ChEMBL CHEMBL107 colchicine NA none 2 hour
003017078004.CEL TG_rat_vit_Col_ctl_8h_1 Non_Steatotic Non_steatotic Non_steatotic_none none Non_steatotic_8h Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control 3017329011 Rattus norvegicus 5168021LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype colchicine Control _ colchicine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5039021LRA 5039021LRA:biotin biotin P_MTAB_23069 3017078004 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip colchicine ChEMBL CHEMBL107 colchicine NA none 8 hour
003017078005.CEL TG_rat_vit_Col_ctl_8h_2 Non_Steatotic Non_steatotic Non_steatotic_none none Non_steatotic_8h Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control 3017329012 Rattus norvegicus 5168022LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype colchicine Control _ colchicine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5039022LRA 5039022LRA:biotin biotin P_MTAB_23069 3017078005 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip colchicine ChEMBL CHEMBL107 colchicine NA none 8 hour
003017078012.CEL TG_rat_vit_Col_ctl_24h_1 Non_Steatotic Non_steatotic Non_steatotic_none none Non_steatotic_24h Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control 3017329019 Rattus norvegicus 5168031LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype colchicine Control _ colchicine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5039031LRA 5039031LRA:biotin biotin P_MTAB_23069 3017078012 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip colchicine ChEMBL CHEMBL107 colchicine NA none 24 hour
003017078013.CEL TG_rat_vit_Col_ctl_24h_2 Non_Steatotic Non_steatotic Non_steatotic_none none Non_steatotic_24h Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control 3017329020 Rattus norvegicus 5168032LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype colchicine Control _ colchicine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5039032LRA 5039032LRA:biotin biotin P_MTAB_23069 3017078013 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip colchicine ChEMBL CHEMBL107 colchicine NA none 24 hour
003017547029.CEL TG_rat_vit_Col_200um_2h_1 Non_Steatotic Non_steatotic Non_steatotic_low none Non_steatotic_2h Low Non_steatotic_2h_Low Non_steatotic_2h_Control Non_steatotic_2h_Low 3017329005 Rattus norvegicus 5168041LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype colchicine Low _ colchicine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5204031LRA 5204031LRA:biotin biotin P_MTAB_23069 3017547029 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip colchicine ChEMBL CHEMBL107 colchicine 2.0e+02 micromolar low 2 hour
003017547030.CEL TG_rat_vit_Col_200um_2h_2 Non_Steatotic Non_steatotic Non_steatotic_low none Non_steatotic_2h Low Non_steatotic_2h_Low Non_steatotic_2h_Control Non_steatotic_2h_Low 3017329006 Rattus norvegicus 5168042LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype colchicine Low _ colchicine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5204032LRA 5204032LRA:biotin biotin P_MTAB_23069 3017547030 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip colchicine ChEMBL CHEMBL107 colchicine 2.0e+02 micromolar low 2 hour
003017547015.CEL TG_rat_vit_Col_200um_8h_1 Non_Steatotic Non_steatotic Non_steatotic_low none Non_steatotic_8h Low Non_steatotic_8h_Low Non_steatotic_8h_Control Non_steatotic_8h_Low 3017329013 Rattus norvegicus 5168051LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype colchicine Low _ colchicine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5204041LRA 5204041LRA:biotin biotin P_MTAB_23069 3017547015 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip colchicine ChEMBL CHEMBL107 colchicine 2.0e+02 micromolar low 8 hour
003017547016.CEL TG_rat_vit_Col_200um_8h_2 Non_Steatotic Non_steatotic Non_steatotic_low none Non_steatotic_8h Low Non_steatotic_8h_Low Non_steatotic_8h_Control Non_steatotic_8h_Low 3017329014 Rattus norvegicus 5168052LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype colchicine Low _ colchicine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5204042LRA 5204042LRA:biotin biotin P_MTAB_23069 3017547016 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip colchicine ChEMBL CHEMBL107 colchicine 2.0e+02 micromolar low 8 hour
003017547023.CEL TG_rat_vit_Col_200um_24h_1 Non_Steatotic Non_steatotic Non_steatotic_low none Non_steatotic_24h Low Non_steatotic_24h_Low Non_steatotic_24h_Control Non_steatotic_24h_Low 3017329021 Rattus norvegicus 5168061LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype colchicine Low _ colchicine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5204051LRA 5204051LRA:biotin biotin P_MTAB_23069 3017547023 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip colchicine ChEMBL CHEMBL107 colchicine 2.0e+02 micromolar low 24 hour
003017547024.CEL TG_rat_vit_Col_200um_24h_2 Non_Steatotic Non_steatotic Non_steatotic_low none Non_steatotic_24h Low Non_steatotic_24h_Low Non_steatotic_24h_Control Non_steatotic_24h_Low 3017329022 Rattus norvegicus 5168062LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype colchicine Low _ colchicine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5204052LRA 5204052LRA:biotin biotin P_MTAB_23069 3017547024 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip colchicine ChEMBL CHEMBL107 colchicine 2.0e+02 micromolar low 24 hour
003017289028.CEL TG_rat_vit_Col_1000um_2h_1 Non_Steatotic Non_steatotic Non_steatotic_middle none Non_steatotic_2h Middle Non_steatotic_2h_Middle Non_steatotic_2h_Control Non_steatotic_2h_MiddleHigh Non_steatotic_2h_Control 3017329007 Rattus norvegicus 5168071LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype colchicine Middle _ colchicine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5138061LRA 5138061LRA:biotin biotin P_MTAB_23069 3017289028 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip colchicine ChEMBL CHEMBL107 colchicine 1.0e+03 micromolar middle 2 hour
003017289029.CEL TG_rat_vit_Col_1000um_2h_2 Non_Steatotic Non_steatotic Non_steatotic_middle none Non_steatotic_2h Middle Non_steatotic_2h_Middle Non_steatotic_2h_Control Non_steatotic_2h_MiddleHigh Non_steatotic_2h_Control 3017329008 Rattus norvegicus 5168072LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype colchicine Middle _ colchicine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5138062LRA 5138062LRA:biotin biotin P_MTAB_23069 3017289029 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip colchicine ChEMBL CHEMBL107 colchicine 1.0e+03 micromolar middle 2 hour
003017289014.CEL TG_rat_vit_Col_1000um_8h_1 Non_Steatotic Non_steatotic Non_steatotic_middle none Non_steatotic_8h Middle Non_steatotic_8h_Middle Non_steatotic_8h_Control Non_steatotic_8h_MiddleHigh Non_steatotic_8h_Control 3017329015 Rattus norvegicus 5168081LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype colchicine Middle _ colchicine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5138071LRA 5138071LRA:biotin biotin P_MTAB_23069 3017289014 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip colchicine ChEMBL CHEMBL107 colchicine 1.0e+03 micromolar middle 8 hour
003017289015.CEL TG_rat_vit_Col_1000um_8h_2 Non_Steatotic Non_steatotic Non_steatotic_middle none Non_steatotic_8h Middle Non_steatotic_8h_Middle Non_steatotic_8h_Control Non_steatotic_8h_MiddleHigh Non_steatotic_8h_Control 3017329016 Rattus norvegicus 5168082LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype colchicine Middle _ colchicine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5138072LRA 5138072LRA:biotin biotin P_MTAB_23069 3017289015 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip colchicine ChEMBL CHEMBL107 colchicine 1.0e+03 micromolar middle 8 hour
003017289022.CEL TG_rat_vit_Col_1000um_24h_1 Non_Steatotic Non_steatotic Non_steatotic_middle none Non_steatotic_24h Middle Non_steatotic_24h_Middle Non_steatotic_24h_Control Non_steatotic_24h_MiddleHigh Non_steatotic_24h_Control 3017329023 Rattus norvegicus 5168091LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype colchicine Middle _ colchicine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5138081LRA 5138081LRA:biotin biotin P_MTAB_23069 3017289022 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip colchicine ChEMBL CHEMBL107 colchicine 1.0e+03 micromolar middle 24 hour
003017289023.CEL TG_rat_vit_Col_1000um_24h_2 Non_Steatotic Non_steatotic Non_steatotic_middle none Non_steatotic_24h Middle Non_steatotic_24h_Middle Non_steatotic_24h_Control Non_steatotic_24h_MiddleHigh Non_steatotic_24h_Control 3017329024 Rattus norvegicus 5168092LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype colchicine Middle _ colchicine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5138082LRA 5138082LRA:biotin biotin P_MTAB_23069 3017289023 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip colchicine ChEMBL CHEMBL107 colchicine 1.0e+03 micromolar middle 24 hour
003017297019.CEL TG_rat_vit_Col_5000um_2h_1 Non_Steatotic Non_steatotic Non_steatotic_high none Non_steatotic_2h High Non_steatotic_2h_High Non_steatotic_2h_Control Non_steatotic_2h_MiddleHigh Non_steatotic_2h_Control 3017329009 Rattus norvegicus 5168101LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype colchicine High _ colchicine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5146061LRA 5146061LRA:biotin biotin P_MTAB_23069 3017297019 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip colchicine ChEMBL CHEMBL107 colchicine 5.0e+03 micromolar high 2 hour
003017297020.CEL TG_rat_vit_Col_5000um_2h_2 Non_Steatotic Non_steatotic Non_steatotic_high none Non_steatotic_2h High Non_steatotic_2h_High Non_steatotic_2h_Control Non_steatotic_2h_MiddleHigh Non_steatotic_2h_Control 3017329010 Rattus norvegicus 5168102LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype colchicine High _ colchicine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5146062LRA 5146062LRA:biotin biotin P_MTAB_23069 3017297020 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip colchicine ChEMBL CHEMBL107 colchicine 5.0e+03 micromolar high 2 hour
003017297005.CEL TG_rat_vit_Col_5000um_8h_1 Non_Steatotic Non_steatotic Non_steatotic_high none Non_steatotic_8h High Non_steatotic_8h_High Non_steatotic_8h_Control Non_steatotic_8h_MiddleHigh Non_steatotic_8h_Control 3017329017 Rattus norvegicus 5168111LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype colchicine High _ colchicine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5146071LRA 5146071LRA:biotin biotin P_MTAB_23069 3017297005 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.11.zip colchicine ChEMBL CHEMBL107 colchicine 5.0e+03 micromolar high 8 hour
003017297006.CEL TG_rat_vit_Col_5000um_8h_2 Non_Steatotic Non_steatotic Non_steatotic_high none Non_steatotic_8h High Non_steatotic_8h_High Non_steatotic_8h_Control Non_steatotic_8h_MiddleHigh Non_steatotic_8h_Control 3017329018 Rattus norvegicus 5168112LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype colchicine High _ colchicine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5146072LRA 5146072LRA:biotin biotin P_MTAB_23069 3017297006 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.12.zip colchicine ChEMBL CHEMBL107 colchicine 5.0e+03 micromolar high 8 hour
003017297013.CEL TG_rat_vit_Col_5000um_24h_1 Non_Steatotic Non_steatotic Non_steatotic_high none Non_steatotic_24h High Non_steatotic_24h_High Non_steatotic_24h_Control Non_steatotic_24h_MiddleHigh Non_steatotic_24h_Control 3017329025 Rattus norvegicus 5168121LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype colchicine High _ colchicine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5146081LRA 5146081LRA:biotin biotin P_MTAB_23069 3017297013 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.12.zip colchicine ChEMBL CHEMBL107 colchicine 5.0e+03 micromolar high 24 hour
003017297014.CEL TG_rat_vit_Col_5000um_24h_2 Non_Steatotic Non_steatotic Non_steatotic_high none Non_steatotic_24h High Non_steatotic_24h_High Non_steatotic_24h_Control Non_steatotic_24h_MiddleHigh Non_steatotic_24h_Control 3017329026 Rattus norvegicus 5168122LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype colchicine High _ colchicine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5146082LRA 5146082LRA:biotin biotin P_MTAB_23069 3017297014 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.12.zip colchicine ChEMBL CHEMBL107 colchicine 5.0e+03 micromolar high 24 hour
003017388019.CEL TG_rat_vit_Imi_ctl_2h_1 Non_Steatotic Non_steatotic Non_steatotic_none none Non_steatotic_2h Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control 3017216023 Rattus norvegicus 5120011LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype imipramine Control _ imipramine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5188041LRA 5188041LRA:biotin biotin P_MTAB_23069 3017388019 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.21.zip imipramine ChEMBL CHEMBL11 imipramine NA none 2 hour
003017388020.CEL TG_rat_vit_Imi_ctl_2h_2 Non_Steatotic Non_steatotic Non_steatotic_none none Non_steatotic_2h Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control 3017216024 Rattus norvegicus 5120012LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype imipramine Control _ imipramine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5188042LRA 5188042LRA:biotin biotin P_MTAB_23069 3017388020 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.21.zip imipramine ChEMBL CHEMBL11 imipramine NA none 2 hour
003017388027.CEL TG_rat_vit_Imi_ctl_8h_1 Non_Steatotic Non_steatotic Non_steatotic_none none Non_steatotic_8h Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control 3017217001 Rattus norvegicus 5120021LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype imipramine Control _ imipramine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5188051LRA 5188051LRA:biotin biotin P_MTAB_23069 3017388027 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.21.zip imipramine ChEMBL CHEMBL11 imipramine NA none 8 hour
003017388028.CEL TG_rat_vit_Imi_ctl_8h_2 Non_Steatotic Non_steatotic Non_steatotic_none none Non_steatotic_8h Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control 3017217002 Rattus norvegicus 5120022LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype imipramine Control _ imipramine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5188052LRA 5188052LRA:biotin biotin P_MTAB_23069 3017388028 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.21.zip imipramine ChEMBL CHEMBL11 imipramine NA none 8 hour
003017389005.CEL TG_rat_vit_Imi_ctl_24h_1 Non_Steatotic Non_steatotic Non_steatotic_none none Non_steatotic_24h Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control 3017217009 Rattus norvegicus 5120031LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype imipramine Control _ imipramine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5188061LRA 5188061LRA:biotin biotin P_MTAB_23069 3017389005 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.21.zip imipramine ChEMBL CHEMBL11 imipramine NA none 24 hour
003017389006.CEL TG_rat_vit_Imi_ctl_24h_2 Non_Steatotic Non_steatotic Non_steatotic_none none Non_steatotic_24h Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control 3017217010 Rattus norvegicus 5120032LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype imipramine Control _ imipramine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5188062LRA 5188062LRA:biotin biotin P_MTAB_23069 3017389006 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.21.zip imipramine ChEMBL CHEMBL11 imipramine NA none 24 hour
003017145017.CEL TG_rat_vit_Imi_4um_2h_1 Non_Steatotic Non_steatotic Non_steatotic_low none Non_steatotic_2h Low Non_steatotic_2h_Low Non_steatotic_2h_Control Non_steatotic_2h_Low 3017216025 Rattus norvegicus 5120041LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype imipramine Low _ imipramine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5061031LRA 5061031LRA:biotin biotin P_MTAB_23069 3017145017 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.21.zip imipramine ChEMBL CHEMBL11 imipramine 4.0e+00 micromolar low 2 hour
003017145018.CEL TG_rat_vit_Imi_4um_2h_2 Non_Steatotic Non_steatotic Non_steatotic_low none Non_steatotic_2h Low Non_steatotic_2h_Low Non_steatotic_2h_Control Non_steatotic_2h_Low 3017216026 Rattus norvegicus 5120042LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype imipramine Low _ imipramine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5061032LRA 5061032LRA:biotin biotin P_MTAB_23069 3017145018 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.21.zip imipramine ChEMBL CHEMBL11 imipramine 4.0e+00 micromolar low 2 hour
003017145003.CEL TG_rat_vit_Imi_4um_8h_1 Non_Steatotic Non_steatotic Non_steatotic_low none Non_steatotic_8h Low Non_steatotic_8h_Low Non_steatotic_8h_Control Non_steatotic_8h_Low 3017217003 Rattus norvegicus 5120051LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype imipramine Low _ imipramine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5061041LRA 5061041LRA:biotin biotin P_MTAB_23069 3017145003 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.21.zip imipramine ChEMBL CHEMBL11 imipramine 4.0e+00 micromolar low 8 hour
003017145004.CEL TG_rat_vit_Imi_4um_8h_2 Non_Steatotic Non_steatotic Non_steatotic_low none Non_steatotic_8h Low Non_steatotic_8h_Low Non_steatotic_8h_Control Non_steatotic_8h_Low 3017217004 Rattus norvegicus 5120052LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype imipramine Low _ imipramine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5061042LRA 5061042LRA:biotin biotin P_MTAB_23069 3017145004 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.22.zip imipramine ChEMBL CHEMBL11 imipramine 4.0e+00 micromolar low 8 hour
003017145011.CEL TG_rat_vit_Imi_4um_24h_1 Non_Steatotic Non_steatotic Non_steatotic_low none Non_steatotic_24h Low Non_steatotic_24h_Low Non_steatotic_24h_Control Non_steatotic_24h_Low 3017217011 Rattus norvegicus 5120061LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype imipramine Low _ imipramine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5061051LRA 5061051LRA:biotin biotin P_MTAB_23069 3017145011 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.22.zip imipramine ChEMBL CHEMBL11 imipramine 4.0e+00 micromolar low 24 hour
003017145012.CEL TG_rat_vit_Imi_4um_24h_2 Non_Steatotic Non_steatotic Non_steatotic_low none Non_steatotic_24h Low Non_steatotic_24h_Low Non_steatotic_24h_Control Non_steatotic_24h_Low 3017217012 Rattus norvegicus 5120062LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype imipramine Low _ imipramine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5061052LRA 5061052LRA:biotin biotin P_MTAB_23069 3017145012 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.22.zip imipramine ChEMBL CHEMBL11 imipramine 4.0e+00 micromolar low 24 hour
003017127016.CEL TG_rat_vit_Imi_20um_2h_1 Non_Steatotic Non_steatotic Non_steatotic_middle none Non_steatotic_2h Middle Non_steatotic_2h_Middle Non_steatotic_2h_Control Non_steatotic_2h_MiddleHigh Non_steatotic_2h_MiddleHigh 3017216027 Rattus norvegicus 5120071LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype imipramine Middle _ imipramine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5053121LRA 5053121LRA:biotin biotin P_MTAB_23069 3017127016 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.22.zip imipramine ChEMBL CHEMBL11 imipramine 2.0e+01 micromolar middle 2 hour
003017127017.CEL TG_rat_vit_Imi_20um_2h_2 Non_Steatotic Non_steatotic Non_steatotic_middle none Non_steatotic_2h Middle Non_steatotic_2h_Middle Non_steatotic_2h_Control Non_steatotic_2h_MiddleHigh Non_steatotic_2h_MiddleHigh 3017216028 Rattus norvegicus 5120072LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype imipramine Middle _ imipramine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5053122LRA 5053122LRA:biotin biotin P_MTAB_23069 3017127017 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.22.zip imipramine ChEMBL CHEMBL11 imipramine 2.0e+01 micromolar middle 2 hour
003017111001.CEL TG_rat_vit_Imi_20um_8h_1 Non_Steatotic Non_steatotic Non_steatotic_middle none Non_steatotic_8h Middle Non_steatotic_8h_Middle Non_steatotic_8h_Control Non_steatotic_8h_MiddleHigh Non_steatotic_8h_MiddleHigh 3017217005 Rattus norvegicus 5120081LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype imipramine Middle _ imipramine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5046011LRA 5046011LRA:biotin biotin P_MTAB_23069 3017111001 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.22.zip imipramine ChEMBL CHEMBL11 imipramine 2.0e+01 micromolar middle 8 hour
003017111002.CEL TG_rat_vit_Imi_20um_8h_2 Non_Steatotic Non_steatotic Non_steatotic_middle none Non_steatotic_8h Middle Non_steatotic_8h_Middle Non_steatotic_8h_Control Non_steatotic_8h_MiddleHigh Non_steatotic_8h_MiddleHigh 3017217006 Rattus norvegicus 5120082LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype imipramine Middle _ imipramine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5046012LRA 5046012LRA:biotin biotin P_MTAB_23069 3017111002 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.22.zip imipramine ChEMBL CHEMBL11 imipramine 2.0e+01 micromolar middle 8 hour
003017111009.CEL TG_rat_vit_Imi_20um_24h_1 Non_Steatotic Non_steatotic Non_steatotic_middle none Non_steatotic_24h Middle Non_steatotic_24h_Middle Non_steatotic_24h_Control Non_steatotic_24h_MiddleHigh Non_steatotic_24h_MiddleHigh 3017217013 Rattus norvegicus 5120091LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype imipramine Middle _ imipramine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5046021LRA 5046021LRA:biotin biotin P_MTAB_23069 3017111009 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.22.zip imipramine ChEMBL CHEMBL11 imipramine 2.0e+01 micromolar middle 24 hour
003017111010.CEL TG_rat_vit_Imi_20um_24h_2 Non_Steatotic Non_steatotic Non_steatotic_middle none Non_steatotic_24h Middle Non_steatotic_24h_Middle Non_steatotic_24h_Control Non_steatotic_24h_MiddleHigh Non_steatotic_24h_MiddleHigh 3017217014 Rattus norvegicus 5120092LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype imipramine Middle _ imipramine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5046022LRA 5046022LRA:biotin biotin P_MTAB_23069 3017111010 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.22.zip imipramine ChEMBL CHEMBL11 imipramine 2.0e+01 micromolar middle 24 hour
003017531018.CEL TG_rat_vit_Imi_100um_2h_1 Non_Steatotic Non_steatotic Non_steatotic_high none Non_steatotic_2h High Non_steatotic_2h_High Non_steatotic_2h_Control Non_steatotic_2h_MiddleHigh Non_steatotic_2h_MiddleHigh 3017216029 Rattus norvegicus 5120101LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype imipramine High _ imipramine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5207121LRA 5207121LRA:biotin biotin P_MTAB_23069 3017531018 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.22.zip imipramine ChEMBL CHEMBL11 imipramine 1.0e+02 micromolar high 2 hour
003017531019.CEL TG_rat_vit_Imi_100um_2h_2 Non_Steatotic Non_steatotic Non_steatotic_high none Non_steatotic_2h High Non_steatotic_2h_High Non_steatotic_2h_Control Non_steatotic_2h_MiddleHigh Non_steatotic_2h_MiddleHigh 3017216030 Rattus norvegicus 5120102LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype imipramine High _ imipramine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5207122LRA 5207122LRA:biotin biotin P_MTAB_23069 3017531019 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.22.zip imipramine ChEMBL CHEMBL11 imipramine 1.0e+02 micromolar high 2 hour
003017026016.CEL TG_rat_vit_Imi_100um_8h_1 Non_Steatotic Non_steatotic Non_steatotic_high none Non_steatotic_8h High Non_steatotic_8h_High Non_steatotic_8h_Control Non_steatotic_8h_MiddleHigh Non_steatotic_8h_MiddleHigh 3017217007 Rattus norvegicus 5120111LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype imipramine High _ imipramine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5015011LRA 5015011LRA:biotin biotin P_MTAB_23069 3017026016 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.22.zip imipramine ChEMBL CHEMBL11 imipramine 1.0e+02 micromolar high 8 hour
003017026017.CEL TG_rat_vit_Imi_100um_8h_2 Non_Steatotic Non_steatotic Non_steatotic_high none Non_steatotic_8h High Non_steatotic_8h_High Non_steatotic_8h_Control Non_steatotic_8h_MiddleHigh Non_steatotic_8h_MiddleHigh 3017217008 Rattus norvegicus 5120112LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype imipramine High _ imipramine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5015012LRA 5015012LRA:biotin biotin P_MTAB_23069 3017026017 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.22.zip imipramine ChEMBL CHEMBL11 imipramine 1.0e+02 micromolar high 8 hour
003017026024.CEL TG_rat_vit_Imi_100um_24h_1 Non_Steatotic Non_steatotic Non_steatotic_high none Non_steatotic_24h High Non_steatotic_24h_High Non_steatotic_24h_Control Non_steatotic_24h_MiddleHigh Non_steatotic_24h_MiddleHigh 3017217015 Rattus norvegicus 5120121LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype imipramine High _ imipramine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5015021LRA 5015021LRA:biotin biotin P_MTAB_23069 3017026024 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.22.zip imipramine ChEMBL CHEMBL11 imipramine 1.0e+02 micromolar high 24 hour
003017026025.CEL TG_rat_vit_Imi_100um_24h_2 Non_Steatotic Non_steatotic Non_steatotic_high none Non_steatotic_24h High Non_steatotic_24h_High Non_steatotic_24h_Control Non_steatotic_24h_MiddleHigh Non_steatotic_24h_Control 3017217016 Rattus norvegicus 5120122LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype imipramine High _ imipramine cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5015022LRA 5015022LRA:biotin biotin P_MTAB_23069 3017026025 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.22.zip imipramine ChEMBL CHEMBL11 imipramine 1.0e+02 micromolar high 24 hour
003017030008.CEL TG_rat_vit_Tam_Ctl_2h_1 Steatotic Non_steatotic Non_steatotic_none none Non_steatotic_2h Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control 3017148020 Rattus norvegicus 5060011LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype tamoxifen Control _ tamoxifen cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5019031LRA 5019031LRA:biotin biotin P_MTAB_23069 3017030008 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip tamoxifen ChEMBL CHEMBL83 tamoxifen NA none 2 hour
003017030009.CEL TG_rat_vit_Tam_Ctl_2h_2 Steatotic Non_steatotic Non_steatotic_none none Non_steatotic_2h Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control 3017148021 Rattus norvegicus 5060012LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype tamoxifen Control _ tamoxifen cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5019032LRA 5019032LRA:biotin biotin P_MTAB_23069 3017030009 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip tamoxifen ChEMBL CHEMBL83 tamoxifen NA none 2 hour
003017029024.CEL TG_rat_vit_Tam_Ctl_8h_1 Steatotic Non_steatotic Non_steatotic_none none Non_steatotic_8h Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control 3017148028 Rattus norvegicus 5060021LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype tamoxifen Control _ tamoxifen cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5019041LRA 5019041LRA:biotin biotin P_MTAB_23069 3017029024 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip tamoxifen ChEMBL CHEMBL83 tamoxifen NA none 8 hour
003017029025.CEL TG_rat_vit_Tam_Ctl_8h_2 Steatotic Non_steatotic Non_steatotic_none none Non_steatotic_8h Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control 3017148029 Rattus norvegicus 5060022LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype tamoxifen Control _ tamoxifen cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5019042LRA 5019042LRA:biotin biotin P_MTAB_23069 3017029025 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip tamoxifen ChEMBL CHEMBL83 tamoxifen NA none 8 hour
003017030002.CEL TG_rat_vit_Tam_Ctl_24h_1 Steatotic Non_steatotic Non_steatotic_none none Non_steatotic_24h Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control 3017149006 Rattus norvegicus 5060031LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype tamoxifen Control _ tamoxifen cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5019051LRA 5019051LRA:biotin biotin P_MTAB_23069 3017030002 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip tamoxifen ChEMBL CHEMBL83 tamoxifen NA none 24 hour
003017030003.CEL TG_rat_vit_Tam_Ctl_24h_2 Steatotic Non_steatotic Non_steatotic_none none Non_steatotic_24h Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control 3017149007 Rattus norvegicus 5060032LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype tamoxifen Control _ tamoxifen cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5019052LRA 5019052LRA:biotin biotin P_MTAB_23069 3017030003 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip tamoxifen ChEMBL CHEMBL83 tamoxifen NA none 24 hour
003017463014.CEL TG_rat_vit_Tam_120nm_2h_1 Steatotic Steatotic Steatotic_low low Steatotic_2h Low Steatotic_2h_Low Steatotic_2h_Low Steatotic_2h_Low 3017148022 Rattus norvegicus 5060041LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype tamoxifen Low _ tamoxifen cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5200031LRA 5200031LRA:biotin biotin P_MTAB_23069 3017463014 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip tamoxifen ChEMBL CHEMBL83 tamoxifen 1.2e-01 micromolar low 2 hour
003017463015.CEL TG_rat_vit_Tam_120nm_2h_2 Steatotic Steatotic Steatotic_low low Steatotic_2h Low Steatotic_2h_Low Steatotic_2h_Low Steatotic_2h_Low 3017148023 Rattus norvegicus 5060042LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype tamoxifen Low _ tamoxifen cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5200032LRA 5200032LRA:biotin biotin P_MTAB_23069 3017463015 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip tamoxifen ChEMBL CHEMBL83 tamoxifen 1.2e-01 micromolar low 2 hour
003017462030.CEL TG_rat_vit_Tam_120nm_8h_1 Steatotic Steatotic Steatotic_low low Steatotic_8h Low Steatotic_8h_Low Steatotic_8h_Low Steatotic_8h_Low 3017148030 Rattus norvegicus 5060051LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype tamoxifen Low _ tamoxifen cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5200041LRA 5200041LRA:biotin biotin P_MTAB_23069 3017462030 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip tamoxifen ChEMBL CHEMBL83 tamoxifen 1.2e-01 micromolar low 8 hour
003017463001.CEL TG_rat_vit_Tam_120nm_8h_2 Steatotic Steatotic Steatotic_low low Steatotic_8h Low Steatotic_8h_Low Steatotic_8h_Low Steatotic_8h_Low 3017149001 Rattus norvegicus 5060052LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype tamoxifen Low _ tamoxifen cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5200042LRA 5200042LRA:biotin biotin P_MTAB_23069 3017463001 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip tamoxifen ChEMBL CHEMBL83 tamoxifen 1.2e-01 micromolar low 8 hour
003017463008.CEL TG_rat_vit_Tam_120nm_24h_1 Steatotic Steatotic Steatotic_low low Steatotic_24h Low Steatotic_24h_Low Steatotic_24h_Low Steatotic_24h_Low 3017149008 Rattus norvegicus 5060061LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype tamoxifen Low _ tamoxifen cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5200051LRA 5200051LRA:biotin biotin P_MTAB_23069 3017463008 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip tamoxifen ChEMBL CHEMBL83 tamoxifen 1.2e-01 micromolar low 24 hour
003017463009.CEL TG_rat_vit_Tam_120nm_24h_2 Steatotic Steatotic Steatotic_low low Steatotic_24h Low Steatotic_24h_Low Steatotic_24h_Low Steatotic_24h_Low 3017149009 Rattus norvegicus 5060062LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype tamoxifen Low _ tamoxifen cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5200052LRA 5200052LRA:biotin biotin P_MTAB_23069 3017463009 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip tamoxifen ChEMBL CHEMBL83 tamoxifen 1.2e-01 micromolar low 24 hour
003017068004.CEL TG_rat_vit_Tam_600nm_2h_1 Steatotic Steatotic Steatotic_middle middle Steatotic_2h Middle Steatotic_2h_Middle Steatotic_2h_Middle Steatotic_2h_MiddleHigh Steatotic_2h_MiddleHigh 3017148024 Rattus norvegicus 5060071LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype tamoxifen Middle _ tamoxifen cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5033092LRA 5033092LRA:biotin biotin P_MTAB_23069 3017068004 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip tamoxifen ChEMBL CHEMBL83 tamoxifen 6.0e-01 micromolar middle 2 hour
003017069021.CEL TG_rat_vit_Tam_600nm_2h_2 Steatotic Steatotic Steatotic_middle middle Steatotic_2h Middle Steatotic_2h_Middle Steatotic_2h_Middle Steatotic_2h_MiddleHigh Steatotic_2h_MiddleHigh 3017148025 Rattus norvegicus 5060072LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype tamoxifen Middle _ tamoxifen cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5033091LRA 5033091LRA:biotin biotin P_MTAB_23069 3017069021 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip tamoxifen ChEMBL CHEMBL83 tamoxifen 6.0e-01 micromolar middle 2 hour
003017069007.CEL TG_rat_vit_Tam_600nm_8h_1 Steatotic Steatotic Steatotic_middle middle Steatotic_8h Middle Steatotic_8h_Middle Steatotic_8h_Middle Steatotic_8h_MiddleHigh Steatotic_8h_MiddleHigh 3017149002 Rattus norvegicus 5060081LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype tamoxifen Middle _ tamoxifen cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5033101LRA 5033101LRA:biotin biotin P_MTAB_23069 3017069007 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip tamoxifen ChEMBL CHEMBL83 tamoxifen 6.0e-01 micromolar middle 8 hour
003017069008.CEL TG_rat_vit_Tam_600nm_8h_2 Steatotic Steatotic Steatotic_middle middle Steatotic_8h Middle Steatotic_8h_Middle Steatotic_8h_Middle Steatotic_8h_MiddleHigh Steatotic_8h_MiddleHigh 3017149003 Rattus norvegicus 5060082LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype tamoxifen Middle _ tamoxifen cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5033102LRA 5033102LRA:biotin biotin P_MTAB_23069 3017069008 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip tamoxifen ChEMBL CHEMBL83 tamoxifen 6.0e-01 micromolar middle 8 hour
003017069015.CEL TG_rat_vit_Tam_600nm_24h_1 Steatotic Steatotic Steatotic_middle middle Steatotic_24h Middle Steatotic_24h_Middle Steatotic_24h_Middle Steatotic_24h_MiddleHigh Steatotic_24h_MiddleHigh 3017149010 Rattus norvegicus 5060091LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype tamoxifen Middle _ tamoxifen cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5033111LRA 5033111LRA:biotin biotin P_MTAB_23069 3017069015 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip tamoxifen ChEMBL CHEMBL83 tamoxifen 6.0e-01 micromolar middle 24 hour
003017069016.CEL TG_rat_vit_Tam_600nm_24h_2 Steatotic Steatotic Steatotic_middle middle Steatotic_24h Middle Steatotic_24h_Middle Steatotic_24h_Middle Steatotic_24h_MiddleHigh Steatotic_24h_MiddleHigh 3017149011 Rattus norvegicus 5060092LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype tamoxifen Middle _ tamoxifen cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5033112LRA 5033112LRA:biotin biotin P_MTAB_23069 3017069016 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip tamoxifen ChEMBL CHEMBL83 tamoxifen 6.0e-01 micromolar middle 24 hour
003017257012.CEL TG_rat_vit_Tam_3um_2h_1 Steatotic Steatotic Steatotic_high high Steatotic_2h High Steatotic_2h_High Steatotic_2h_High Steatotic_2h_MiddleHigh Steatotic_2h_MiddleHigh 3017148026 Rattus norvegicus 5060101LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype tamoxifen High _ tamoxifen cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5131031LRA 5131031LRA:biotin biotin P_MTAB_23069 3017257012 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip tamoxifen ChEMBL CHEMBL83 tamoxifen 3.0e+00 micromolar high 2 hour
003017257013.CEL TG_rat_vit_Tam_3um_2h_2 Steatotic Steatotic Steatotic_high high Steatotic_2h High Steatotic_2h_High Steatotic_2h_High Steatotic_2h_MiddleHigh Steatotic_2h_MiddleHigh 3017148027 Rattus norvegicus 5060102LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype tamoxifen High _ tamoxifen cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5131032LRA 5131032LRA:biotin biotin P_MTAB_23069 3017257013 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip tamoxifen ChEMBL CHEMBL83 tamoxifen 3.0e+00 micromolar high 2 hour
003017256028.CEL TG_rat_vit_Tam_3um_8h_1 Steatotic Steatotic Steatotic_high high Steatotic_8h High Steatotic_8h_High Steatotic_8h_High Steatotic_8h_MiddleHigh Steatotic_8h_MiddleHigh 3017149004 Rattus norvegicus 5060111LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype tamoxifen High _ tamoxifen cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5131041LRA 5131041LRA:biotin biotin P_MTAB_23069 3017256028 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip tamoxifen ChEMBL CHEMBL83 tamoxifen 3.0e+00 micromolar high 8 hour
003017256029.CEL TG_rat_vit_Tam_3um_8h_2 Steatotic Steatotic Steatotic_high high Steatotic_8h High Steatotic_8h_High Steatotic_8h_High Steatotic_8h_MiddleHigh Steatotic_8h_MiddleHigh 3017149005 Rattus norvegicus 5060112LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype tamoxifen High _ tamoxifen cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5131042LRA 5131042LRA:biotin biotin P_MTAB_23069 3017256029 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip tamoxifen ChEMBL CHEMBL83 tamoxifen 3.0e+00 micromolar high 8 hour
003017257006.CEL TG_rat_vit_Tam_3um_24h_1 Steatotic Steatotic Steatotic_high high Steatotic_24h High Steatotic_24h_High Steatotic_24h_High Steatotic_24h_MiddleHigh Steatotic_24h_MiddleHigh 3017149012 Rattus norvegicus 5060121LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype tamoxifen High _ tamoxifen cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5131051LRA 5131051LRA:biotin biotin P_MTAB_23069 3017257006 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip tamoxifen ChEMBL CHEMBL83 tamoxifen 3.0e+00 micromolar high 24 hour
003017257007.CEL TG_rat_vit_Tam_3um_24h_2 Steatotic Steatotic Steatotic_high high Steatotic_24h High Steatotic_24h_High Steatotic_24h_High Steatotic_24h_MiddleHigh Steatotic_24h_MiddleHigh 3017149013 Rattus norvegicus 5060122LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype tamoxifen High _ tamoxifen cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5131052LRA 5131052LRA:biotin biotin P_MTAB_23069 3017257007 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.36.zip tamoxifen ChEMBL CHEMBL83 tamoxifen 3.0e+00 micromolar high 24 hour
003017121024.CEL TG_rat_vit_Vpa_Ctl_2h_1 Steatotic Non_steatotic Non_steatotic_none none Non_steatotic_2h Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control 3017006001 Rattus norvegicus 5008011LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype valproic acid Control _ valproic acid cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5056061LRA 5056061LRA:biotin biotin P_MTAB_23069 3017121024 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip valproic acid ChEMBL CHEMBL109 valproic acid NA none 2 hour
003017121025.CEL TG_rat_vit_Vpa_Ctl_2h_2 Steatotic Non_steatotic Non_steatotic_none none Non_steatotic_2h Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control Non_steatotic_2h_Control 3017006002 Rattus norvegicus 5008012LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype valproic acid Control _ valproic acid cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5056062LRA 5056062LRA:biotin biotin P_MTAB_23069 3017121025 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip valproic acid ChEMBL CHEMBL109 valproic acid NA none 2 hour
003017121010.CEL TG_rat_vit_Vpa_Ctl_8h_1 Steatotic Non_steatotic Non_steatotic_none none Non_steatotic_8h Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control 3017006009 Rattus norvegicus 5008021LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype valproic acid Control _ valproic acid cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5056071LRA 5056071LRA:biotin biotin P_MTAB_23069 3017121010 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip valproic acid ChEMBL CHEMBL109 valproic acid NA none 8 hour
003017121011.CEL TG_rat_vit_Vpa_Ctl_8h_2 Steatotic Non_steatotic Non_steatotic_none none Non_steatotic_8h Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control Non_steatotic_8h_Control 3017006010 Rattus norvegicus 5008022LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype valproic acid Control _ valproic acid cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5056072LRA 5056072LRA:biotin biotin P_MTAB_23069 3017121011 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip valproic acid ChEMBL CHEMBL109 valproic acid NA none 8 hour
003017121018.CEL TG_rat_vit_Vpa_Ctl_24h_1 Steatotic Non_steatotic Non_steatotic_none none Non_steatotic_24h Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control 3017006017 Rattus norvegicus 5008031LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype valproic acid Control _ valproic acid cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5056081LRA 5056081LRA:biotin biotin P_MTAB_23069 3017121018 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip valproic acid ChEMBL CHEMBL109 valproic acid NA none 24 hour
003017121019.CEL TG_rat_vit_Vpa_Ctl_24h_2 Steatotic Non_steatotic Non_steatotic_none none Non_steatotic_24h Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control Non_steatotic_24h_Control 3017006018 Rattus norvegicus 5008032LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype valproic acid Control _ valproic acid cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5056082LRA 5056082LRA:biotin biotin P_MTAB_23069 3017121019 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip valproic acid ChEMBL CHEMBL109 valproic acid NA none 24 hour
003017118030.CEL TG_rat_vit_Vpa_400um_2h_1 Steatotic Steatotic Steatotic_low low Steatotic_2h Low Steatotic_2h_Low Steatotic_2h_Low Steatotic_2h_Low 3017006003 Rattus norvegicus 5008041LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype valproic acid Low _ valproic acid cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5040061LRA 5040061LRA:biotin biotin P_MTAB_23069 3017118030 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip valproic acid ChEMBL CHEMBL109 valproic acid 4.0e+02 micromolar low 2 hour
003017119001.CEL TG_rat_vit_Vpa_400um_2h_2 Steatotic Steatotic Steatotic_low low Steatotic_2h Low Steatotic_2h_Low Steatotic_2h_Low Steatotic_2h_Low 3017006004 Rattus norvegicus 5008042LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype valproic acid Low _ valproic acid cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5040062LRA 5040062LRA:biotin biotin P_MTAB_23069 3017119001 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip valproic acid ChEMBL CHEMBL109 valproic acid 4.0e+02 micromolar low 2 hour
003017118016.CEL TG_rat_vit_Vpa_400um_8h_1 Steatotic Steatotic Steatotic_low low Steatotic_8h Low Steatotic_8h_Low Steatotic_8h_Low Steatotic_8h_Low 3017006011 Rattus norvegicus 5008051LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype valproic acid Low _ valproic acid cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5040071LRA 5040071LRA:biotin biotin P_MTAB_23069 3017118016 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip valproic acid ChEMBL CHEMBL109 valproic acid 4.0e+02 micromolar low 8 hour
003017118017.CEL TG_rat_vit_Vpa_400um_8h_2 Steatotic Steatotic Steatotic_low low Steatotic_8h Low Steatotic_8h_Low Steatotic_8h_Low Steatotic_8h_Low 3017006012 Rattus norvegicus 5008052LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype valproic acid Low _ valproic acid cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5040072LRA 5040072LRA:biotin biotin P_MTAB_23069 3017118017 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip valproic acid ChEMBL CHEMBL109 valproic acid 4.0e+02 micromolar low 8 hour
003017118025.CEL TG_rat_vit_Vpa_400um_24h_1 Steatotic Steatotic Steatotic_low low Steatotic_24h Low Steatotic_24h_Low Steatotic_24h_Low Steatotic_24h_Low 3017006019 Rattus norvegicus 5008061LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype valproic acid Low _ valproic acid cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5040082LRA 5040082LRA:biotin biotin P_MTAB_23069 3017118025 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip valproic acid ChEMBL CHEMBL109 valproic acid 4.0e+02 micromolar low 24 hour
003017118024.CEL TG_rat_vit_Vpa_400um_24h_2 Steatotic Steatotic Steatotic_low low Steatotic_24h Low Steatotic_24h_Low Steatotic_24h_Low Steatotic_24h_Low 3017005026 Rattus norvegicus 5008062LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype valproic acid Low _ valproic acid cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5040081LRA 5040081LRA:biotin biotin P_MTAB_23069 3017118024 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip valproic acid ChEMBL CHEMBL109 valproic acid 4.0e+02 micromolar low 24 hour
003017373027.CEL TG_rat_vit_Vpa_2000um_2h_1 Steatotic Steatotic Steatotic_middle middle Steatotic_2h Middle Steatotic_2h_Middle Steatotic_2h_Middle Steatotic_2h_MiddleHigh Steatotic_2h_MiddleHigh 3017006005 Rattus norvegicus 5008071LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype valproic acid Middle _ valproic acid cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5194031LRA 5194031LRA:biotin biotin P_MTAB_23069 3017373027 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip valproic acid ChEMBL CHEMBL109 valproic acid 2.0e+03 micromolar middle 2 hour
003017373028.CEL TG_rat_vit_Vpa_2000um_2h_2 Steatotic Steatotic Steatotic_middle middle Steatotic_2h Middle Steatotic_2h_Middle Steatotic_2h_Middle Steatotic_2h_MiddleHigh Steatotic_2h_MiddleHigh 3017006006 Rattus norvegicus 5008072LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype valproic acid Middle _ valproic acid cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5194032LRA 5194032LRA:biotin biotin P_MTAB_23069 3017373028 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip valproic acid ChEMBL CHEMBL109 valproic acid 2.0e+03 micromolar middle 2 hour
003017373013.CEL TG_rat_vit_Vpa_2000um_8h_1 Steatotic Steatotic Steatotic_middle middle Steatotic_8h Middle Steatotic_8h_Middle Steatotic_8h_Middle Steatotic_8h_MiddleHigh Steatotic_8h_MiddleHigh 3017006013 Rattus norvegicus 5008081LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype valproic acid Middle _ valproic acid cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5194041LRA 5194041LRA:biotin biotin P_MTAB_23069 3017373013 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip valproic acid ChEMBL CHEMBL109 valproic acid 2.0e+03 micromolar middle 8 hour
003017373014.CEL TG_rat_vit_Vpa_2000um_8h_2 Steatotic Steatotic Steatotic_middle middle Steatotic_8h Middle Steatotic_8h_Middle Steatotic_8h_Middle Steatotic_8h_MiddleHigh Steatotic_8h_MiddleHigh 3017006014 Rattus norvegicus 5008082LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype valproic acid Middle _ valproic acid cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5194042LRA 5194042LRA:biotin biotin P_MTAB_23069 3017373014 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip valproic acid ChEMBL CHEMBL109 valproic acid 2.0e+03 micromolar middle 8 hour
003017373021.CEL TG_rat_vit_Vpa_2000um_24h_1 Steatotic Steatotic Steatotic_middle middle Steatotic_24h Middle Steatotic_24h_Middle Steatotic_24h_Middle Steatotic_24h_MiddleHigh Steatotic_24h_MiddleHigh 3017005027 Rattus norvegicus 5008091LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype valproic acid Middle _ valproic acid cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5194051LRA 5194051LRA:biotin biotin P_MTAB_23069 3017373021 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip valproic acid ChEMBL CHEMBL109 valproic acid 2.0e+03 micromolar middle 24 hour
003017373022.CEL TG_rat_vit_Vpa_2000um_24h_2 Steatotic Steatotic Steatotic_middle middle Steatotic_24h Middle Steatotic_24h_Middle Steatotic_24h_Middle Steatotic_24h_MiddleHigh Steatotic_24h_MiddleHigh 3017005028 Rattus norvegicus 5008092LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype valproic acid Middle _ valproic acid cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5194052LRA 5194052LRA:biotin biotin P_MTAB_23069 3017373022 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip valproic acid ChEMBL CHEMBL109 valproic acid 2.0e+03 micromolar middle 24 hour
003017169013.CEL TG_rat_vit_Vpa_10000um_2h_1 Steatotic Steatotic Steatotic_high high Steatotic_2h High Steatotic_2h_High Steatotic_2h_High Steatotic_2h_MiddleHigh Steatotic_2h_MiddleHigh 3017006007 Rattus norvegicus 5008101LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype valproic acid High _ valproic acid cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5065101LRA 5065101LRA:biotin biotin P_MTAB_23069 3017169013 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip valproic acid ChEMBL CHEMBL109 valproic acid 1.0e+04 micromolar high 2 hour
003017169014.CEL TG_rat_vit_Vpa_10000um_2h_2 Steatotic Steatotic Steatotic_high high Steatotic_2h High Steatotic_2h_High Steatotic_2h_High Steatotic_2h_MiddleHigh Steatotic_2h_MiddleHigh 3017006008 Rattus norvegicus 5008102LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype valproic acid High _ valproic acid cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5065102LRA 5065102LRA:biotin biotin P_MTAB_23069 3017169014 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip valproic acid ChEMBL CHEMBL109 valproic acid 1.0e+04 micromolar high 2 hour
003017169021.CEL TG_rat_vit_Vpa_10000um_8h_1 Steatotic Steatotic Steatotic_high high Steatotic_8h High Steatotic_8h_High Steatotic_8h_High Steatotic_8h_MiddleHigh Steatotic_8h_MiddleHigh 3017006015 Rattus norvegicus 5008111LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype valproic acid High _ valproic acid cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5065111LRA 5065111LRA:biotin biotin P_MTAB_23069 3017169021 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip valproic acid ChEMBL CHEMBL109 valproic acid 1.0e+04 micromolar high 8 hour
003017169022.CEL TG_rat_vit_Vpa_10000um_8h_2 Steatotic Steatotic Steatotic_high high Steatotic_8h High Steatotic_8h_High Steatotic_8h_High Steatotic_8h_MiddleHigh Steatotic_8h_MiddleHigh 3017006016 Rattus norvegicus 5008112LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype valproic acid High _ valproic acid cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5065112LRA 5065112LRA:biotin biotin P_MTAB_23069 3017169022 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip valproic acid ChEMBL CHEMBL109 valproic acid 1.0e+04 micromolar high 8 hour
003017169029.CEL TG_rat_vit_Vpa_10000um_24h_1 Steatotic Steatotic Steatotic_high high Steatotic_24h High Steatotic_24h_High Steatotic_24h_High Steatotic_24h_MiddleHigh Steatotic_24h_MiddleHigh 3017005029 Rattus norvegicus 5008121LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype valproic acid High _ valproic acid cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5065121LRA 5065121LRA:biotin biotin P_MTAB_23069 3017169029 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip valproic acid ChEMBL CHEMBL109 valproic acid 1.0e+04 micromolar high 24 hour
003017169030.CEL TG_rat_vit_Vpa_10000um_24h_2 Steatotic Steatotic Steatotic_high high Steatotic_24h High Steatotic_24h_High Steatotic_24h_High Steatotic_24h_MiddleHigh Steatotic_24h_MiddleHigh 3017005030 Rattus norvegicus 5008122LRA Sprague Dawley 6 week adult male liver hepatocyte wild type genotype valproic acid High _ valproic acid cell P_MTAB_23065 P_MTAB_23066 P_MTAB_23067 P_MTAB_23068 5065122LRA 5065122LRA:biotin biotin P_MTAB_23069 3017169030 array assay A_AFFY_43 ArrayExpress P_MTAB_23070 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E_MTAB_797/E_MTAB_797.raw.40.zip valproic acid ChEMBL CHEMBL109 valproic acid 1.0e+04 micromolar high 24 hour
# Set input parameters         
cutOffAdj.P.Val <- 0.05
cutOfflogFC <- 0
cutOffAveExpr <- 6
cutOffPval <- 0.05 #used if Adj.P.Val removes all

# Groups to compare
Description_column<-"Group"
InterestGroup<- "Steatotic"
Controls<-"Non_steatotic"
Subset input tables. Only include data relevant to current analysis
# remove unused metadata
descriptionTable2<-descriptionTable[,c("Array", "Name", Description_column)]
write.table(descriptionTable2, paste0(descriptionFile, "_sub.txt"), row.names=FALSE, quote=FALSE, sep="\t")

# remove unused samples
descriptionTable2<- descriptionTable2[c(grep(InterestGroup,descriptionTable2[,Description_column]), grep(Controls,descriptionTable2[,Description_column])),]
colnames(descriptionTable2)<-c("Array", "Name", "experimentFactor")
normDataTable<-normDataTable[,c(descriptionTable2$Name)]
Amount of samples per group
Var1 Freq
Non_steatotic 72
Steatotic 68
PCA plot to exclude the post-processing outliers replicates

Creating UMAP plots

Data structuring & cleaning

Statistical analysis with limma

## --[[ Saving table for contrast Steatoticx1+Non_steatoticx-1 ]]--
Displaying top 6 genes, to check data & pipeline correctness

Plotting histograms

## [1] "p-value histograms"
## --[[ Saving Steatoticx1+Non_steatoticx-1.txt P.Value_hist.png ]]--

## [1] "adapted fold change histograms"
## --[[ Saving Steatoticx1+Non_steatoticx-1.txt FC_hist.png ]]--

Creating table based on the cut-offs

## [1] "Creating table based on the cut-offs"
## [1] "Applying cutOffAveExpr (6) removed 3115 genes. 9038 genes remain."
## [1] "Additionally, applying cutOfflogFC (0) removed 0 genes. 9038 genes remain."
## [1] "Additionally, applying cutOffAdj.P.Val (0.05) removed 8898 genes. 140 genes remain."
## --[[ Saving table Steatoticx1+Non_steatoticx-1_chosen_cutOff.txt ]]--

Creating UMAP based on DEGs

Creating UMAP plots

List of differentially expressed genes (DEGs)

## R version 4.3.1 (2023-06-16 ucrt)
## Platform: x86_64-w64-mingw32/x64 (64-bit)
## Running under: Windows 10 x64 (build 19045)
## 
## Matrix products: default
## 
## 
## locale:
## [1] LC_COLLATE=Dutch_Netherlands.utf8  LC_CTYPE=Dutch_Netherlands.utf8   
## [3] LC_MONETARY=Dutch_Netherlands.utf8 LC_NUMERIC=C                      
## [5] LC_TIME=Dutch_Netherlands.utf8    
## 
## time zone: Europe/Amsterdam
## tzcode source: internal
## 
## attached base packages:
## [1] stats     graphics  grDevices utils     datasets  methods   base     
## 
## other attached packages:
## [1] gdata_3.0.0   limma_3.56.2  umap_0.2.10.0 plotly_4.10.3 ggplot2_3.4.4
## [6] DT_0.30       knitr_1.45   
## 
## loaded via a namespace (and not attached):
##  [1] sass_0.4.7        utf8_1.2.4        generics_0.1.3    tidyr_1.3.0      
##  [5] gtools_3.9.4      lattice_0.21-8    digest_0.6.33     magrittr_2.0.3   
##  [9] evaluate_0.23     grid_4.3.1        fastmap_1.1.1     jsonlite_1.8.7   
## [13] Matrix_1.5-4.1    RSpectra_0.16-1   httr_1.4.7        purrr_1.0.2      
## [17] fansi_1.0.5       crosstalk_1.2.0   viridisLite_0.4.2 scales_1.2.1     
## [21] lazyeval_0.2.2    jquerylib_0.1.4   cli_3.6.1         rlang_1.1.1      
## [25] ellipsis_0.3.2    munsell_0.5.0     yaml_2.3.7        withr_2.5.2      
## [29] cachem_1.0.8      tools_4.3.1       dplyr_1.1.3       colorspace_2.1-0 
## [33] reticulate_1.34.0 vctrs_0.6.4       R6_2.5.1          png_0.1-8        
## [37] lifecycle_1.0.4   htmlwidgets_1.6.2 pkgconfig_2.0.3   pillar_1.9.0     
## [41] bslib_0.5.1       gtable_0.3.4      data.table_1.14.8 glue_1.6.2       
## [45] Rcpp_1.0.11       xfun_0.39         tibble_3.2.1      tidyselect_1.2.0 
## [49] highr_0.10        farver_2.1.1      htmltools_0.5.5   rmarkdown_2.25   
## [53] compiler_4.3.1    askpass_1.2.0     openssl_2.1.1

End of Report